miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27424 3' -57 NC_005869.1 + 16189 0.66 0.484759
Target:  5'- cCCGGCGGUaccgCcgccuGCCGCCGCuGCGCc-- -3'
miRNA:   3'- -GGUCGUCGaa--G-----UGGUGGCG-CGCGuac -5'
27424 3' -57 NC_005869.1 + 17548 0.66 0.484759
Target:  5'- cCCGGUGGCgguggcagCGCCGCCcGCcCGCAg- -3'
miRNA:   3'- -GGUCGUCGaa------GUGGUGG-CGcGCGUac -5'
27424 3' -57 NC_005869.1 + 9484 0.66 0.474298
Target:  5'- gCC-GCAGCUcgaaggCGCCcCCGCGCaGCGc- -3'
miRNA:   3'- -GGuCGUCGAa-----GUGGuGGCGCG-CGUac -5'
27424 3' -57 NC_005869.1 + 27133 0.66 0.474298
Target:  5'- -aAGCAGCUcCuCUACCGCGCcaGCcgGc -3'
miRNA:   3'- ggUCGUCGAaGuGGUGGCGCG--CGuaC- -5'
27424 3' -57 NC_005869.1 + 15181 0.66 0.463952
Target:  5'- -gAGUuuGUUUUGCCAcCCGCGCGCGc- -3'
miRNA:   3'- ggUCGu-CGAAGUGGU-GGCGCGCGUac -5'
27424 3' -57 NC_005869.1 + 6671 0.66 0.453725
Target:  5'- gCCAGCGGCgg-GCgGCCaGgGCGCGg- -3'
miRNA:   3'- -GGUCGUCGaagUGgUGG-CgCGCGUac -5'
27424 3' -57 NC_005869.1 + 16454 0.67 0.405472
Target:  5'- cUCGGCAGCcgagggcgggggacCGCCGCUGCGgGCGg- -3'
miRNA:   3'- -GGUCGUCGaa------------GUGGUGGCGCgCGUac -5'
27424 3' -57 NC_005869.1 + 26524 0.67 0.404521
Target:  5'- gCAGguGC-UCGcCCACCGC-CGCGa- -3'
miRNA:   3'- gGUCguCGaAGU-GGUGGCGcGCGUac -5'
27424 3' -57 NC_005869.1 + 9390 0.67 0.404521
Target:  5'- -gGGCAGC--CGCCAgUGCGCGUcgGc -3'
miRNA:   3'- ggUCGUCGaaGUGGUgGCGCGCGuaC- -5'
27424 3' -57 NC_005869.1 + 12911 0.67 0.395091
Target:  5'- cUCGGagGGCUUCuuCACCgGCGUGUAUGa -3'
miRNA:   3'- -GGUCg-UCGAAGugGUGG-CGCGCGUAC- -5'
27424 3' -57 NC_005869.1 + 17855 0.67 0.395091
Target:  5'- -aGGCGGCggUACCGCCGgGgGCcgAUGa -3'
miRNA:   3'- ggUCGUCGaaGUGGUGGCgCgCG--UAC- -5'
27424 3' -57 NC_005869.1 + 23699 0.67 0.385804
Target:  5'- gCAGCAGCggCcggGCCACCGcCGgGCu-- -3'
miRNA:   3'- gGUCGUCGaaG---UGGUGGC-GCgCGuac -5'
27424 3' -57 NC_005869.1 + 30838 0.68 0.375756
Target:  5'- cCCAguuGCAGC-UCACCAgggaccggggggcCCGCaGCGCGUc -3'
miRNA:   3'- -GGU---CGUCGaAGUGGU-------------GGCG-CGCGUAc -5'
27424 3' -57 NC_005869.1 + 24531 0.68 0.367668
Target:  5'- cCCucuGCAGCggCACCgcGCUGCGCGgGg- -3'
miRNA:   3'- -GGu--CGUCGaaGUGG--UGGCGCGCgUac -5'
27424 3' -57 NC_005869.1 + 23175 0.68 0.367668
Target:  5'- uCCAGCuGCaUCucCCGCCcCGCGCGg- -3'
miRNA:   3'- -GGUCGuCGaAGu-GGUGGcGCGCGUac -5'
27424 3' -57 NC_005869.1 + 7034 0.68 0.358822
Target:  5'- aCCGGCGGgUcUGCCGCUGCcgaGCGCAg- -3'
miRNA:   3'- -GGUCGUCgAaGUGGUGGCG---CGCGUac -5'
27424 3' -57 NC_005869.1 + 17476 0.68 0.350126
Target:  5'- cCCAGCcccuccAGCcccgCGCgCGCCGCGUGCGc- -3'
miRNA:   3'- -GGUCG------UCGaa--GUG-GUGGCGCGCGUac -5'
27424 3' -57 NC_005869.1 + 22027 0.68 0.350126
Target:  5'- uCCAGCAGCgcaucguaCACCAugccggccucguCCGgGCGgAUGg -3'
miRNA:   3'- -GGUCGUCGaa------GUGGU------------GGCgCGCgUAC- -5'
27424 3' -57 NC_005869.1 + 9142 0.68 0.341581
Target:  5'- aCCAGCAGggUCugCAUgaGCGUGCucAUGa -3'
miRNA:   3'- -GGUCGUCgaAGugGUGg-CGCGCG--UAC- -5'
27424 3' -57 NC_005869.1 + 17597 0.68 0.336527
Target:  5'- cCCGGC-GCUUgACgGCCGUGCgaggggacaccagggGCAUGg -3'
miRNA:   3'- -GGUCGuCGAAgUGgUGGCGCG---------------CGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.