miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27425 5' -56.2 NC_005869.1 + 19081 0.66 0.474828
Target:  5'- aCGCagCGGCAGCGUGcCGUGguCCGUc -3'
miRNA:   3'- -GCGagGUCGUCGCGUaGCAUguGGUA- -5'
27425 5' -56.2 NC_005869.1 + 32067 0.66 0.453921
Target:  5'- uGCUCCcGCgGGCGC-UUGgGCACCAc -3'
miRNA:   3'- gCGAGGuCG-UCGCGuAGCaUGUGGUa -5'
27425 5' -56.2 NC_005869.1 + 16590 0.67 0.443656
Target:  5'- gCGgUCCAGcCGGCGCAUCaUucuggcuccGCGCCGg -3'
miRNA:   3'- -GCgAGGUC-GUCGCGUAGcA---------UGUGGUa -5'
27425 5' -56.2 NC_005869.1 + 29118 0.67 0.433524
Target:  5'- aGCUCUcgggcaAGCAGCuCGUCGUugcCACCGa -3'
miRNA:   3'- gCGAGG------UCGUCGcGUAGCAu--GUGGUa -5'
27425 5' -56.2 NC_005869.1 + 19583 0.67 0.423527
Target:  5'- aGgUCCAGCAGCGCGgggaUGUugcccccCGCCAg -3'
miRNA:   3'- gCgAGGUCGUCGCGUa---GCAu------GUGGUa -5'
27425 5' -56.2 NC_005869.1 + 17376 0.67 0.413669
Target:  5'- cCGCUCCAGCGccgcggccGCGCugagcugCG-GCGCCAc -3'
miRNA:   3'- -GCGAGGUCGU--------CGCGua-----GCaUGUGGUa -5'
27425 5' -56.2 NC_005869.1 + 20375 0.67 0.403954
Target:  5'- aCGCUCCcugcGGCGGCGCugcugGCAUCAUc -3'
miRNA:   3'- -GCGAGG----UCGUCGCGuagcaUGUGGUA- -5'
27425 5' -56.2 NC_005869.1 + 3031 0.67 0.403954
Target:  5'- aGCUCgAGCAGCGggagGUgGUGCugCAc -3'
miRNA:   3'- gCGAGgUCGUCGCg---UAgCAUGugGUa -5'
27425 5' -56.2 NC_005869.1 + 24209 0.67 0.394384
Target:  5'- cCGcCUCCAGCgAGUGCuUCGUcuCGCCGc -3'
miRNA:   3'- -GC-GAGGUCG-UCGCGuAGCAu-GUGGUa -5'
27425 5' -56.2 NC_005869.1 + 22847 0.68 0.384963
Target:  5'- gGCU-CAGCAGCGCcUCcuuCACCAUg -3'
miRNA:   3'- gCGAgGUCGUCGCGuAGcauGUGGUA- -5'
27425 5' -56.2 NC_005869.1 + 5405 0.68 0.384029
Target:  5'- gCGCuUCCgAGCuGCGCGUCGUucagguaGCACUg- -3'
miRNA:   3'- -GCG-AGG-UCGuCGCGUAGCA-------UGUGGua -5'
27425 5' -56.2 NC_005869.1 + 11823 0.68 0.348796
Target:  5'- gGCUCU-GCGGCGCAUCaugGCGCUg- -3'
miRNA:   3'- gCGAGGuCGUCGCGUAGca-UGUGGua -5'
27425 5' -56.2 NC_005869.1 + 20778 0.69 0.340141
Target:  5'- gGggCCAGCAGCGCGUCccACuCCAg -3'
miRNA:   3'- gCgaGGUCGUCGCGUAGcaUGuGGUa -5'
27425 5' -56.2 NC_005869.1 + 17483 0.69 0.307091
Target:  5'- -cCUCCAGCcccgcgcGCGCcgCGUGCGCCu- -3'
miRNA:   3'- gcGAGGUCGu------CGCGuaGCAUGUGGua -5'
27425 5' -56.2 NC_005869.1 + 12109 0.69 0.299222
Target:  5'- uCGC-CCAGCgcgAGCGC-UCGaGCGCCAa -3'
miRNA:   3'- -GCGaGGUCG---UCGCGuAGCaUGUGGUa -5'
27425 5' -56.2 NC_005869.1 + 18047 0.7 0.29151
Target:  5'- cCGCcccgUCCAGCGGCGCcuggggcgCGUGC-CCAg -3'
miRNA:   3'- -GCG----AGGUCGUCGCGua------GCAUGuGGUa -5'
27425 5' -56.2 NC_005869.1 + 9931 0.7 0.29151
Target:  5'- gGCg-CAGCAGCGCcagGUCGgcCACCAc -3'
miRNA:   3'- gCGagGUCGUCGCG---UAGCauGUGGUa -5'
27425 5' -56.2 NC_005869.1 + 28887 0.7 0.25528
Target:  5'- aGCUCUGGgAGCGCAUgcgCGUGCuCCAc -3'
miRNA:   3'- gCGAGGUCgUCGCGUA---GCAUGuGGUa -5'
27425 5' -56.2 NC_005869.1 + 10514 0.71 0.241855
Target:  5'- gGCUCCAGCAGgGgG-CGUcCGCCGUc -3'
miRNA:   3'- gCGAGGUCGUCgCgUaGCAuGUGGUA- -5'
27425 5' -56.2 NC_005869.1 + 30272 0.72 0.210859
Target:  5'- uCGCUCCAGCgccgGGCGCcaccuccUCGUcCACCAc -3'
miRNA:   3'- -GCGAGGUCG----UCGCGu------AGCAuGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.