Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27427 | 3' | -58.5 | NC_005869.1 | + | 8010 | 0.66 | 0.454291 |
Target: 5'- -cCUCGgGGGAgccgauggGGCGGaAGGCGAUGg -3' miRNA: 3'- gaGAGCaUCCUg-------CCGCC-UCCGCUGCg -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 8175 | 0.66 | 0.44445 |
Target: 5'- -gCUUGaAGGGCGGUGGcaGGGUGcCGUc -3' miRNA: 3'- gaGAGCaUCCUGCCGCC--UCCGCuGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 5655 | 0.66 | 0.43473 |
Target: 5'- uUC-CGcAGGACGGCcucGGAGGaccacaucUGGCGCu -3' miRNA: 3'- gAGaGCaUCCUGCCG---CCUCC--------GCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 2595 | 0.66 | 0.431838 |
Target: 5'- -gCUUGcGGcacuggcugaagcuGGCGGCGGAGGCcaucggGGCGCa -3' miRNA: 3'- gaGAGCaUC--------------CUGCCGCCUCCG------CUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 8526 | 0.66 | 0.425135 |
Target: 5'- -cCUCGgcGG-CGGCGGccggucucAGGCGG-GCa -3' miRNA: 3'- gaGAGCauCCuGCCGCC--------UCCGCUgCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 3904 | 0.66 | 0.425135 |
Target: 5'- gUCcCGUAGGAggUGGagaaGGGGGCGGagaaGCu -3' miRNA: 3'- gAGaGCAUCCU--GCCg---CCUCCGCUg---CG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 3180 | 0.66 | 0.425135 |
Target: 5'- gUCcCGUAGGAggUGGagaaGGGGGCGGagaaGCu -3' miRNA: 3'- gAGaGCAUCCU--GCCg---CCUCCGCUg---CG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 15327 | 0.66 | 0.415666 |
Target: 5'- --gUgGUGGuGAgCGGCGGcGGGgGGCGCa -3' miRNA: 3'- gagAgCAUC-CU-GCCGCC-UCCgCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 20578 | 0.66 | 0.412851 |
Target: 5'- cCUCgUCGUcuucgagggccccgGGGcGCGGCuGGuGGCGGCGg -3' miRNA: 3'- -GAG-AGCA--------------UCC-UGCCG-CCuCCGCUGCg -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 16803 | 0.67 | 0.397123 |
Target: 5'- ----aGUGcGGACGGUGGGcacGGUGACGUc -3' miRNA: 3'- gagagCAU-CCUGCCGCCU---CCGCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 6771 | 0.67 | 0.388053 |
Target: 5'- gCUggCGggccAGGACGGgGGAuuuuggacggGGCGugGCg -3' miRNA: 3'- -GAgaGCa---UCCUGCCgCCU----------CCGCugCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 7907 | 0.67 | 0.388053 |
Target: 5'- --aUgGUGGG-CGGUGGAcggGGCGGCGg -3' miRNA: 3'- gagAgCAUCCuGCCGCCU---CCGCUGCg -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 8443 | 0.67 | 0.387153 |
Target: 5'- gCUCUCcccguccugggugGUGcccuGGA-GGCGGAGGgUGGCGCg -3' miRNA: 3'- -GAGAG-------------CAU----CCUgCCGCCUCC-GCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 9355 | 0.67 | 0.37912 |
Target: 5'- cCUC-CGcgGGGACGGgGGgcgcaggccgGGGaCGGCGCc -3' miRNA: 3'- -GAGaGCa-UCCUGCCgCC----------UCC-GCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 14175 | 0.67 | 0.37912 |
Target: 5'- --aUCGUGGagaacuaccuGGCGGUGG-GGCGGCaGCa -3' miRNA: 3'- gagAGCAUC----------CUGCCGCCuCCGCUG-CG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 7276 | 0.67 | 0.37912 |
Target: 5'- -gCUCGUAGGccGCGGCggccuugcGGAGGCuGGugUGCg -3' miRNA: 3'- gaGAGCAUCC--UGCCG--------CCUCCG-CU--GCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 20724 | 0.67 | 0.37912 |
Target: 5'- ---gCGcGGcGGCGGCGGccggcGGCGGCGCc -3' miRNA: 3'- gagaGCaUC-CUGCCGCCu----CCGCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 8410 | 0.67 | 0.361673 |
Target: 5'- gCUgUCccAGuGGCGGUGGuAGGUGAUGCu -3' miRNA: 3'- -GAgAGcaUC-CUGCCGCC-UCCGCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 8585 | 0.68 | 0.353161 |
Target: 5'- -gCUCGggcagcGGGA-GGUGGucGCGGCGCa -3' miRNA: 3'- gaGAGCa-----UCCUgCCGCCucCGCUGCG- -5' |
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27427 | 3' | -58.5 | NC_005869.1 | + | 12083 | 0.68 | 0.353161 |
Target: 5'- gCUgUCccAGGACGuGCGGcAGGUGAuCGCc -3' miRNA: 3'- -GAgAGcaUCCUGC-CGCC-UCCGCU-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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