miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27427 5' -53.9 NC_005869.1 + 9237 0.66 0.682849
Target:  5'- -uGCcgCAccUCCUCCUCuaaggagGGCGGGg -3'
miRNA:   3'- acCGuaGU--AGGAGGAGuaga---CUGCCC- -5'
27427 5' -53.9 NC_005869.1 + 22652 0.66 0.647433
Target:  5'- aGGCucucaucGUCGUCCUCCgu-UCccACGGGg -3'
miRNA:   3'- aCCG-------UAGUAGGAGGaguAGacUGCCC- -5'
27427 5' -53.9 NC_005869.1 + 33218 0.66 0.641698
Target:  5'- cGcGCugaUAUCCUCCUCAuuacugucccccucuUCUGGgGGGu -3'
miRNA:   3'- aC-CGua-GUAGGAGGAGU---------------AGACUgCCC- -5'
27427 5' -53.9 NC_005869.1 + 11992 0.66 0.637108
Target:  5'- gUGGCGg---CCUCCg-GUgUGGCGGGc -3'
miRNA:   3'- -ACCGUaguaGGAGGagUAgACUGCCC- -5'
27427 5' -53.9 NC_005869.1 + 20558 0.67 0.613015
Target:  5'- cUGGCGccagucuUCcUCCUCCUCGUCgucuucgagGGCcccGGGg -3'
miRNA:   3'- -ACCGU-------AGuAGGAGGAGUAGa--------CUG---CCC- -5'
27427 5' -53.9 NC_005869.1 + 199 0.67 0.591282
Target:  5'- gGGCG--GUCCUCCgCGg--GGCGGGg -3'
miRNA:   3'- aCCGUagUAGGAGGaGUagaCUGCCC- -5'
27427 5' -53.9 NC_005869.1 + 26593 0.67 0.591282
Target:  5'- cGGCcgCAUCCUCUUCAa-UGACa-- -3'
miRNA:   3'- aCCGuaGUAGGAGGAGUagACUGccc -5'
27427 5' -53.9 NC_005869.1 + 23823 0.69 0.459534
Target:  5'- -aGCcUCGUCCUCCUCcuccucgCUGACcaGGGg -3'
miRNA:   3'- acCGuAGUAGGAGGAGua-----GACUG--CCC- -5'
27427 5' -53.9 NC_005869.1 + 6558 0.7 0.428989
Target:  5'- gGGCAggaCGUCCagcuggUCCUCGUCgGGgGGGu -3'
miRNA:   3'- aCCGUa--GUAGG------AGGAGUAGaCUgCCC- -5'
27427 5' -53.9 NC_005869.1 + 9319 0.7 0.426
Target:  5'- gUGGCAucuccUCGUCUUCUUCuUCUGcugcugcugccuccGCGGGg -3'
miRNA:   3'- -ACCGU-----AGUAGGAGGAGuAGAC--------------UGCCC- -5'
27427 5' -53.9 NC_005869.1 + 20688 0.72 0.328051
Target:  5'- aUGGCGUCgauGUCCUCCUCcagggagGAgCGGGa -3'
miRNA:   3'- -ACCGUAG---UAGGAGGAGuaga---CU-GCCC- -5'
27427 5' -53.9 NC_005869.1 + 9735 0.74 0.259363
Target:  5'- gGGCGaguccuccUCcugcUCCUCCUCGUCccGGCGGGg -3'
miRNA:   3'- aCCGU--------AGu---AGGAGGAGUAGa-CUGCCC- -5'
27427 5' -53.9 NC_005869.1 + 5191 0.74 0.259363
Target:  5'- cGGUAUCGUCCUCCagCAggUCUGGuuguuucuCGGGu -3'
miRNA:   3'- aCCGUAGUAGGAGGa-GU--AGACU--------GCCC- -5'
27427 5' -53.9 NC_005869.1 + 20396 1.1 0.000663
Target:  5'- cUGGCAUCAUCCUCCUCAUCUGACGGGc -3'
miRNA:   3'- -ACCGUAGUAGGAGGAGUAGACUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.