miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27429 3' -58.2 NC_005869.1 + 7587 0.66 0.419584
Target:  5'- aGGAgGGCUUgGAUGGCcuCgUCGGUGu -3'
miRNA:   3'- aUCUgCCGGAgCUACUGc-GgAGCCAC- -5'
27429 3' -58.2 NC_005869.1 + 19074 0.66 0.419584
Target:  5'- aGGAUGGCgacgccgUCGAUGAUGCCgcagUGGUc -3'
miRNA:   3'- aUCUGCCGg------AGCUACUGCGGa---GCCAc -5'
27429 3' -58.2 NC_005869.1 + 17606 0.66 0.391329
Target:  5'- -uGACGGCCgugCGAgggGACaccaggggcaugGgCUCGGUGa -3'
miRNA:   3'- auCUGCCGGa--GCUa--CUG------------CgGAGCCAC- -5'
27429 3' -58.2 NC_005869.1 + 7288 0.66 0.391329
Target:  5'- -cGGCGGCCUUGcgGAgGCU--GGUGu -3'
miRNA:   3'- auCUGCCGGAGCuaCUgCGGagCCAC- -5'
27429 3' -58.2 NC_005869.1 + 8258 0.67 0.373195
Target:  5'- aGGGCGGUgUUGGUGGCGaggcagCGGUGc -3'
miRNA:   3'- aUCUGCCGgAGCUACUGCgga---GCCAC- -5'
27429 3' -58.2 NC_005869.1 + 13785 0.67 0.364344
Target:  5'- ---uUGGUCUCGAUGGCGCCgauGGg- -3'
miRNA:   3'- aucuGCCGGAGCUACUGCGGag-CCac -5'
27429 3' -58.2 NC_005869.1 + 1666 0.67 0.363467
Target:  5'- gUGGGCGGuCCUCGAacggaagaguuucUGcAUGCCUgguuugCGGUGg -3'
miRNA:   3'- -AUCUGCC-GGAGCU-------------AC-UGCGGA------GCCAC- -5'
27429 3' -58.2 NC_005869.1 + 9595 0.67 0.362591
Target:  5'- -cGGCGGCUgagcuccgccacCGAgGGCGCCUCGGc- -3'
miRNA:   3'- auCUGCCGGa-----------GCUaCUGCGGAGCCac -5'
27429 3' -58.2 NC_005869.1 + 20966 0.67 0.355639
Target:  5'- gUGGAgGGCCgCGAgGGCGgcuCCUCGGUc -3'
miRNA:   3'- -AUCUgCCGGaGCUaCUGC---GGAGCCAc -5'
27429 3' -58.2 NC_005869.1 + 18249 0.67 0.355639
Target:  5'- gAGAUGGCCauggcCGA--GCGCgUCGGUGc -3'
miRNA:   3'- aUCUGCCGGa----GCUacUGCGgAGCCAC- -5'
27429 3' -58.2 NC_005869.1 + 11748 0.67 0.355639
Target:  5'- gAGcGCGGCCUCccUGGCGCCcgagCGGg- -3'
miRNA:   3'- aUC-UGCCGGAGcuACUGCGGa---GCCac -5'
27429 3' -58.2 NC_005869.1 + 11993 0.68 0.330414
Target:  5'- -uGGCGGCCUcCGGUGugGCgggCGGc- -3'
miRNA:   3'- auCUGCCGGA-GCUACugCGga-GCCac -5'
27429 3' -58.2 NC_005869.1 + 10090 0.69 0.283993
Target:  5'- gUAGugGGgCUgGAUGA--CCUCGGUGu -3'
miRNA:   3'- -AUCugCCgGAgCUACUgcGGAGCCAC- -5'
27429 3' -58.2 NC_005869.1 + 24425 0.69 0.269708
Target:  5'- cGGA-GGCCgcCGA-GGCGcCCUCGGUGg -3'
miRNA:   3'- aUCUgCCGGa-GCUaCUGC-GGAGCCAC- -5'
27429 3' -58.2 NC_005869.1 + 17818 0.7 0.230323
Target:  5'- cGGugGGUUcCGcGUGGCGCCUCGGc- -3'
miRNA:   3'- aUCugCCGGaGC-UACUGCGGAGCCac -5'
27429 3' -58.2 NC_005869.1 + 6795 0.71 0.201311
Target:  5'- uUGGACGGgg-CG-UGGCGUCUCGGUGa -3'
miRNA:   3'- -AUCUGCCggaGCuACUGCGGAGCCAC- -5'
27429 3' -58.2 NC_005869.1 + 5300 0.71 0.201311
Target:  5'- cGGAgGGCCcgCGugaggGugGUCUCGGUGa -3'
miRNA:   3'- aUCUgCCGGa-GCua---CugCGGAGCCAC- -5'
27429 3' -58.2 NC_005869.1 + 5661 0.76 0.085652
Target:  5'- aGGACGGCCUCGGaggaccacaucUGGCGCUgcacgaugagggCGGUGg -3'
miRNA:   3'- aUCUGCCGGAGCU-----------ACUGCGGa-----------GCCAC- -5'
27429 3' -58.2 NC_005869.1 + 20733 0.77 0.076655
Target:  5'- -cGGCGGCCggCGgcGGCGCCUgGGUGc -3'
miRNA:   3'- auCUGCCGGa-GCuaCUGCGGAgCCAC- -5'
27429 3' -58.2 NC_005869.1 + 12207 1.06 0.000476
Target:  5'- gUAGACGGCCUCGAUGACGCCUCGGUGc -3'
miRNA:   3'- -AUCUGCCGGAGCUACUGCGGAGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.