miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27434 5' -62.2 NC_005869.1 + 11468 0.66 0.27825
Target:  5'- gGCGCGAGcucaaugacaaggaGCUCauguuuggccuccgCCGGGCGCugGCCGGGg -3'
miRNA:   3'- aCGCGCUC--------------UGGG--------------GGCUCGCG--CGGUUC- -5'
27434 5' -62.2 NC_005869.1 + 18830 0.66 0.274779
Target:  5'- gGCgGCGGGcGCCCCCGuacauggAGCGCagGCCcAGu -3'
miRNA:   3'- aCG-CGCUC-UGGGGGC-------UCGCG--CGGuUC- -5'
27434 5' -62.2 NC_005869.1 + 8698 0.66 0.261905
Target:  5'- cUGCuGCcAGACCCCCauGGCGgucUGCCAGGu -3'
miRNA:   3'- -ACG-CGcUCUGGGGGc-UCGC---GCGGUUC- -5'
27434 5' -62.2 NC_005869.1 + 24267 0.66 0.261905
Target:  5'- aGCGCGccggccgcaaAGACCucaCCCuccuGCGCGCCAu- -3'
miRNA:   3'- aCGCGC----------UCUGG---GGGcu--CGCGCGGUuc -5'
27434 5' -62.2 NC_005869.1 + 7998 0.66 0.255328
Target:  5'- gGCgGCGGGugCCCuCGGGgGaGCCGAu -3'
miRNA:   3'- aCG-CGCUCugGGG-GCUCgCgCGGUUc -5'
27434 5' -62.2 NC_005869.1 + 12115 0.66 0.246981
Target:  5'- aGCGCGAG-CgCUCGAGCGCcaacaaccugggcaGCCuGGc -3'
miRNA:   3'- aCGCGCUCuGgGGGCUCGCG--------------CGGuUC- -5'
27434 5' -62.2 NC_005869.1 + 4539 0.67 0.230369
Target:  5'- gGCGUGGaagaacuuggcGACCCCCuuGUGUccGCCGAGg -3'
miRNA:   3'- aCGCGCU-----------CUGGGGGcuCGCG--CGGUUC- -5'
27434 5' -62.2 NC_005869.1 + 22822 0.67 0.230369
Target:  5'- aGCcaGCG--GCUCUCGGGCGCGCCcAGg -3'
miRNA:   3'- aCG--CGCucUGGGGGCUCGCGCGGuUC- -5'
27434 5' -62.2 NC_005869.1 + 20833 0.67 0.215273
Target:  5'- gGCGCGAG-CCCCagcgagagccauaggUGGGCGUgGCCGGc -3'
miRNA:   3'- aCGCGCUCuGGGG---------------GCUCGCG-CGGUUc -5'
27434 5' -62.2 NC_005869.1 + 16968 0.67 0.213027
Target:  5'- cGUGcCGAG-CCCCCGcgccGCGUGCCc-- -3'
miRNA:   3'- aCGC-GCUCuGGGGGCu---CGCGCGGuuc -5'
27434 5' -62.2 NC_005869.1 + 16608 0.67 0.213027
Target:  5'- gGCGCcGGGCCaccggaaccaCCgGGGCGCGCgGGGu -3'
miRNA:   3'- aCGCGcUCUGG----------GGgCUCGCGCGgUUC- -5'
27434 5' -62.2 NC_005869.1 + 33691 0.68 0.204245
Target:  5'- aGCGcCGAGACgagugugagcgaacaCCgCGAGCGgGCCGGu -3'
miRNA:   3'- aCGC-GCUCUG---------------GGgGCUCGCgCGGUUc -5'
27434 5' -62.2 NC_005869.1 + 2279 0.68 0.203706
Target:  5'- cGCGCGGGGCagguggugaugcgcuCCCUGAuGCGCGagaucauCCGGGg -3'
miRNA:   3'- aCGCGCUCUG---------------GGGGCU-CGCGC-------GGUUC- -5'
27434 5' -62.2 NC_005869.1 + 8023 0.68 0.202098
Target:  5'- uUGCGCGAGAauggCCGAGUGCGUgAu- -3'
miRNA:   3'- -ACGCGCUCUggg-GGCUCGCGCGgUuc -5'
27434 5' -62.2 NC_005869.1 + 22193 0.68 0.202098
Target:  5'- aGCGcCGAGACCCgucggCCGucaGCGCCAu- -3'
miRNA:   3'- aCGC-GCUCUGGG-----GGCucgCGCGGUuc -5'
27434 5' -62.2 NC_005869.1 + 11749 0.68 0.201565
Target:  5'- aGCGCGGccucccuGGCgCCCGAGCGgGCg--- -3'
miRNA:   3'- aCGCGCU-------CUGgGGGCUCGCgCGguuc -5'
27434 5' -62.2 NC_005869.1 + 15200 0.68 0.196819
Target:  5'- cGCGCGcGGACCCCCaccuGGgGgGCCuuuGGa -3'
miRNA:   3'- aCGCGC-UCUGGGGGc---UCgCgCGGu--UC- -5'
27434 5' -62.2 NC_005869.1 + 16467 0.68 0.19166
Target:  5'- gGCGgGGGACCgCCGcugcgggcgggcGGCGCuGCCAc- -3'
miRNA:   3'- aCGCgCUCUGGgGGC------------UCGCG-CGGUuc -5'
27434 5' -62.2 NC_005869.1 + 18647 0.69 0.150361
Target:  5'- cGCGCGcGGCCCuCCGAcgucgacgaugGCGgCGCCGGc -3'
miRNA:   3'- aCGCGCuCUGGG-GGCU-----------CGC-GCGGUUc -5'
27434 5' -62.2 NC_005869.1 + 24423 0.69 0.146307
Target:  5'- cGCG-GAGGCCgCCGAG-GCGCCc-- -3'
miRNA:   3'- aCGCgCUCUGGgGGCUCgCGCGGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.