Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27434 | 5' | -62.2 | NC_005869.1 | + | 16467 | 0.68 | 0.19166 |
Target: 5'- gGCGgGGGACCgCCGcugcgggcgggcGGCGCuGCCAc- -3' miRNA: 3'- aCGCgCUCUGGgGGC------------UCGCG-CGGUuc -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 24267 | 0.66 | 0.261905 |
Target: 5'- aGCGCGccggccgcaaAGACCucaCCCuccuGCGCGCCAu- -3' miRNA: 3'- aCGCGC----------UCUGG---GGGcu--CGCGCGGUuc -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 8698 | 0.66 | 0.261905 |
Target: 5'- cUGCuGCcAGACCCCCauGGCGgucUGCCAGGu -3' miRNA: 3'- -ACG-CGcUCUGGGGGc-UCGC---GCGGUUC- -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 22822 | 0.67 | 0.230369 |
Target: 5'- aGCcaGCG--GCUCUCGGGCGCGCCcAGg -3' miRNA: 3'- aCG--CGCucUGGGGGCUCGCGCGGuUC- -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 20833 | 0.67 | 0.215273 |
Target: 5'- gGCGCGAG-CCCCagcgagagccauaggUGGGCGUgGCCGGc -3' miRNA: 3'- aCGCGCUCuGGGG---------------GCUCGCG-CGGUUc -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 16608 | 0.67 | 0.213027 |
Target: 5'- gGCGCcGGGCCaccggaaccaCCgGGGCGCGCgGGGu -3' miRNA: 3'- aCGCGcUCUGG----------GGgCUCGCGCGgUUC- -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 2279 | 0.68 | 0.203706 |
Target: 5'- cGCGCGGGGCagguggugaugcgcuCCCUGAuGCGCGagaucauCCGGGg -3' miRNA: 3'- aCGCGCUCUG---------------GGGGCU-CGCGC-------GGUUC- -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 8023 | 0.68 | 0.202098 |
Target: 5'- uUGCGCGAGAauggCCGAGUGCGUgAu- -3' miRNA: 3'- -ACGCGCUCUggg-GGCUCGCGCGgUuc -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 22193 | 0.68 | 0.202098 |
Target: 5'- aGCGcCGAGACCCgucggCCGucaGCGCCAu- -3' miRNA: 3'- aCGC-GCUCUGGG-----GGCucgCGCGGUuc -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 18830 | 0.66 | 0.274779 |
Target: 5'- gGCgGCGGGcGCCCCCGuacauggAGCGCagGCCcAGu -3' miRNA: 3'- aCG-CGCUC-UGGGGGC-------UCGCG--CGGuUC- -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 23398 | 0.71 | 0.10789 |
Target: 5'- aGCGCGucGCCCCCuccGCGC-CCAGGg -3' miRNA: 3'- aCGCGCucUGGGGGcu-CGCGcGGUUC- -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 11958 | 0.7 | 0.127499 |
Target: 5'- gUGCGCGAGgcggGCUCCCG-GCGacgGCCAGc -3' miRNA: 3'- -ACGCGCUC----UGGGGGCuCGCg--CGGUUc -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 18647 | 0.69 | 0.150361 |
Target: 5'- cGCGCGcGGCCCuCCGAcgucgacgaugGCGgCGCCGGc -3' miRNA: 3'- aCGCGCuCUGGG-GGCU-----------CGC-GCGGUUc -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 25800 | 0.71 | 0.104616 |
Target: 5'- gUGCGCuGGGACCCCCcgcccgaGGGCcCGCCGc- -3' miRNA: 3'- -ACGCG-CUCUGGGGG-------CUCGcGCGGUuc -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 27974 | 0.7 | 0.142354 |
Target: 5'- aGCGCGAGACgCCgGAGaCGCGgacuCCGGu -3' miRNA: 3'- aCGCGCUCUGgGGgCUC-GCGC----GGUUc -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 24551 | 0.7 | 0.127499 |
Target: 5'- cUGCGCGGGggcGCCUUCGAGCuGCGgccCCGGGa -3' miRNA: 3'- -ACGCGCUC---UGGGGGCUCG-CGC---GGUUC- -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 16544 | 0.72 | 0.102007 |
Target: 5'- gGCGCGAGGCgCaCGcGGCGCGCgCGGGg -3' miRNA: 3'- aCGCGCUCUGgGgGC-UCGCGCG-GUUC- -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 10765 | 1.08 | 0.000129 |
Target: 5'- cUGCGCGAGACCCCCGAGCGCGCCAAGa -3' miRNA: 3'- -ACGCGCUCUGGGGGCUCGCGCGGUUC- -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 9619 | 0.7 | 0.138498 |
Target: 5'- gGCGCcucGGcGGCCUCCGcGGCuGCGCCGGGg -3' miRNA: 3'- aCGCG---CU-CUGGGGGC-UCG-CGCGGUUC- -5' |
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27434 | 5' | -62.2 | NC_005869.1 | + | 18469 | 0.7 | 0.134738 |
Target: 5'- cGC-CGGGugCUCCGccuccGGCGCGCCAc- -3' miRNA: 3'- aCGcGCUCugGGGGC-----UCGCGCGGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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