Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27437 | 3' | -67.3 | NC_005869.1 | + | 185 | 0.68 | 0.102093 |
Target: 5'- gGGgUGgaGCCcuGGGGCGGuCCUCCgcgggGCg -3' miRNA: 3'- gCCgACg-CGGc-CCCCGCC-GGAGGa----CG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 5324 | 0.69 | 0.082055 |
Target: 5'- uCGGUgacgGUGaaGGGGGCGGUCUggggCUGCu -3' miRNA: 3'- -GCCGa---CGCggCCCCCGCCGGAg---GACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 5447 | 0.74 | 0.030901 |
Target: 5'- uGGCaGCGgCGGGGcGCGG-UUCCUGCu -3' miRNA: 3'- gCCGaCGCgGCCCC-CGCCgGAGGACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 6508 | 0.67 | 0.11656 |
Target: 5'- aGGUagGCGUCGGuGGgguugaaggaggaGCGGCCUCC-GCc -3' miRNA: 3'- gCCGa-CGCGGCC-CC-------------CGCCGGAGGaCG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 6980 | 0.69 | 0.086681 |
Target: 5'- aGGCg--GCUGGGGaaGGCCggCCUGCg -3' miRNA: 3'- gCCGacgCGGCCCCcgCCGGa-GGACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 7508 | 0.66 | 0.137238 |
Target: 5'- gGGCaccucGCGgCGGuGGGCGaGCa-CCUGCg -3' miRNA: 3'- gCCGa----CGCgGCC-CCCGC-CGgaGGACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 9637 | 1.1 | 0.00003 |
Target: 5'- gCGGCUGCGCCGGGGGCGGCCUCCUGCa -3' miRNA: 3'- -GCCGACGCGGCCCCCGCCGGAGGACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 9786 | 0.66 | 0.140934 |
Target: 5'- cCGGC-GCGCUGcaGGcggaugcggucGGCcaugccccaGGCCUCCUGCu -3' miRNA: 3'- -GCCGaCGCGGC--CC-----------CCG---------CCGGAGGACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 10132 | 0.65 | 0.151773 |
Target: 5'- -aGCcgGCGCgGGGGaggccgcaagcgcGCGGCCUCUccgcccgUGCa -3' miRNA: 3'- gcCGa-CGCGgCCCC-------------CGCCGGAGG-------ACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 10716 | 0.68 | 0.094089 |
Target: 5'- uGGCgcgGCuGUCGGGcgcGGCGGCCcCCgagcgGCa -3' miRNA: 3'- gCCGa--CG-CGGCCC---CCGCCGGaGGa----CG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 11036 | 0.67 | 0.123328 |
Target: 5'- gGGCUGcCGCCaGGugccccugcuGGGcCGGCagaCCUGCa -3' miRNA: 3'- gCCGAC-GCGG-CC----------CCC-GCCGga-GGACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 11731 | 0.77 | 0.017044 |
Target: 5'- gCGGCgGCGgCGGGGGUgagcgcGGCCUCCcugGCg -3' miRNA: 3'- -GCCGaCGCgGCCCCCG------CCGGAGGa--CG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 11841 | 0.67 | 0.10749 |
Target: 5'- aGGCaGCGguCCGGGGuGCucuggauGGCgCUCUUGCg -3' miRNA: 3'- gCCGaCGC--GGCCCC-CG-------CCG-GAGGACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 11975 | 0.69 | 0.082055 |
Target: 5'- cCGGCgacgGCcaGCCaGuGGCGGCCUCCggugugGCg -3' miRNA: 3'- -GCCGa---CG--CGGcCcCCGCCGGAGGa-----CG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 12369 | 0.67 | 0.116874 |
Target: 5'- gGGCUGCaggcccccGCUGGGGagcGCGGgcacguguCCUcCCUGCu -3' miRNA: 3'- gCCGACG--------CGGCCCC---CGCC--------GGA-GGACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 15198 | 0.71 | 0.058889 |
Target: 5'- gGGcCUGCGCuccauguaCGGGGGCGcccGCCgCCUGUc -3' miRNA: 3'- gCC-GACGCG--------GCCCCCGC---CGGaGGACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 15566 | 0.66 | 0.140934 |
Target: 5'- uGGC-GCGCCGGaGGCGGagcaC-CCgGCg -3' miRNA: 3'- gCCGaCGCGGCCcCCGCCg---GaGGaCG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 16613 | 0.71 | 0.058889 |
Target: 5'- uGGCUccGCGCCGGgcGGGcCGGCC-CCagGCc -3' miRNA: 3'- gCCGA--CGCGGCC--CCC-GCCGGaGGa-CG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 16666 | 0.72 | 0.045809 |
Target: 5'- gCGGCcgcgGCGCuggagCGGGcGGCGGCCgccgugccCCUGCc -3' miRNA: 3'- -GCCGa---CGCG-----GCCC-CCGCCGGa-------GGACG- -5' |
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27437 | 3' | -67.3 | NC_005869.1 | + | 17486 | 0.75 | 0.025354 |
Target: 5'- gCGGCguggGUGCUGGagcGGGCGGCuccaccaccacCUCCUGCa -3' miRNA: 3'- -GCCGa---CGCGGCC---CCCGCCG-----------GAGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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