miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27437 3' -67.3 NC_005869.1 + 11731 0.77 0.017044
Target:  5'- gCGGCgGCGgCGGGGGUgagcgcGGCCUCCcugGCg -3'
miRNA:   3'- -GCCGaCGCgGCCCCCG------CCGGAGGa--CG- -5'
27437 3' -67.3 NC_005869.1 + 20742 0.66 0.144722
Target:  5'- -uGCUGCuccuGCCGGGGGCGaCCUacaCCUa- -3'
miRNA:   3'- gcCGACG----CGGCCCCCGCcGGA---GGAcg -5'
27437 3' -67.3 NC_005869.1 + 9786 0.66 0.140934
Target:  5'- cCGGC-GCGCUGcaGGcggaugcggucGGCcaugccccaGGCCUCCUGCu -3'
miRNA:   3'- -GCCGaCGCGGC--CC-----------CCG---------CCGGAGGACG- -5'
27437 3' -67.3 NC_005869.1 + 15566 0.66 0.140934
Target:  5'- uGGC-GCGCCGGaGGCGGagcaC-CCgGCg -3'
miRNA:   3'- gCCGaCGCGGCCcCCGCCg---GaGGaCG- -5'
27437 3' -67.3 NC_005869.1 + 7508 0.66 0.137238
Target:  5'- gGGCaccucGCGgCGGuGGGCGaGCa-CCUGCg -3'
miRNA:   3'- gCCGa----CGCgGCC-CCCGC-CGgaGGACG- -5'
27437 3' -67.3 NC_005869.1 + 12369 0.67 0.116874
Target:  5'- gGGCUGCaggcccccGCUGGGGagcGCGGgcacguguCCUcCCUGCu -3'
miRNA:   3'- gCCGACG--------CGGCCCC---CGCC--------GGA-GGACG- -5'
27437 3' -67.3 NC_005869.1 + 185 0.68 0.102093
Target:  5'- gGGgUGgaGCCcuGGGGCGGuCCUCCgcgggGCg -3'
miRNA:   3'- gCCgACg-CGGc-CCCCGCC-GGAGGa----CG- -5'
27437 3' -67.3 NC_005869.1 + 10716 0.68 0.094089
Target:  5'- uGGCgcgGCuGUCGGGcgcGGCGGCCcCCgagcgGCa -3'
miRNA:   3'- gCCGa--CG-CGGCCC---CCGCCGGaGGa----CG- -5'
27437 3' -67.3 NC_005869.1 + 23066 0.69 0.086681
Target:  5'- cCGcGUUGCccauCCGGGGGUagcaGGCCUUCUGg -3'
miRNA:   3'- -GC-CGACGc---GGCCCCCG----CCGGAGGACg -5'
27437 3' -67.3 NC_005869.1 + 6980 0.69 0.086681
Target:  5'- aGGCg--GCUGGGGaaGGCCggCCUGCg -3'
miRNA:   3'- gCCGacgCGGCCCCcgCCGGa-GGACG- -5'
27437 3' -67.3 NC_005869.1 + 17857 0.74 0.031785
Target:  5'- gCGGCgguacCGCCGGGGGCcgaugagggguGGCaUCCUGCc -3'
miRNA:   3'- -GCCGac---GCGGCCCCCG-----------CCGgAGGACG- -5'
27437 3' -67.3 NC_005869.1 + 16666 0.72 0.045809
Target:  5'- gCGGCcgcgGCGCuggagCGGGcGGCGGCCgccgugccCCUGCc -3'
miRNA:   3'- -GCCGa---CGCG-----GCCC-CCGCCGGa-------GGACG- -5'
27437 3' -67.3 NC_005869.1 + 23722 0.72 0.048445
Target:  5'- gGGCUcggggucaccggGCGCgGGGGGCGGgcccCCUCCUc- -3'
miRNA:   3'- gCCGA------------CGCGgCCCCCGCC----GGAGGAcg -5'
27437 3' -67.3 NC_005869.1 + 27371 0.72 0.049819
Target:  5'- cCGGCaUGCaauuaGCCGGGGGCGGagcCCUcGCa -3'
miRNA:   3'- -GCCG-ACG-----CGGCCCCCGCCggaGGA-CG- -5'
27437 3' -67.3 NC_005869.1 + 15198 0.71 0.058889
Target:  5'- gGGcCUGCGCuccauguaCGGGGGCGcccGCCgCCUGUc -3'
miRNA:   3'- gCC-GACGCG--------GCCCCCGC---CGGaGGACG- -5'
27437 3' -67.3 NC_005869.1 + 16613 0.71 0.058889
Target:  5'- uGGCUccGCGCCGGgcGGGcCGGCC-CCagGCc -3'
miRNA:   3'- gCCGA--CGCGGCC--CCC-GCCGGaGGa-CG- -5'
27437 3' -67.3 NC_005869.1 + 5324 0.69 0.082055
Target:  5'- uCGGUgacgGUGaaGGGGGCGGUCUggggCUGCu -3'
miRNA:   3'- -GCCGa---CGCggCCCCCGCCGGAg---GACG- -5'
27437 3' -67.3 NC_005869.1 + 9637 1.1 0.00003
Target:  5'- gCGGCUGCGCCGGGGGCGGCCUCCUGCa -3'
miRNA:   3'- -GCCGACGCGGCCCCCGCCGGAGGACG- -5'
27437 3' -67.3 NC_005869.1 + 18446 0.66 0.133631
Target:  5'- cCGGCgcggagcgccUGCGCCGccgccGGGUGcuccGCCUCCgGCg -3'
miRNA:   3'- -GCCG----------ACGCGGCc----CCCGC----CGGAGGaCG- -5'
27437 3' -67.3 NC_005869.1 + 11036 0.67 0.123328
Target:  5'- gGGCUGcCGCCaGGugccccugcuGGGcCGGCagaCCUGCa -3'
miRNA:   3'- gCCGAC-GCGG-CC----------CCC-GCCGga-GGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.