miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27441 5' -55.1 NC_005869.1 + 3916 1.1 0.000415
Target:  5'- gCUACUACCACUACCCCGAAGCGGCUCa -3'
miRNA:   3'- -GAUGAUGGUGAUGGGGCUUCGCCGAG- -5'
27441 5' -55.1 NC_005869.1 + 14544 0.78 0.104737
Target:  5'- -aGCUACCACgugggcgaggACCCCGAGGCGGg-- -3'
miRNA:   3'- gaUGAUGGUGa---------UGGGGCUUCGCCgag -5'
27441 5' -55.1 NC_005869.1 + 12430 0.76 0.148603
Target:  5'- -gGCUGCUGCUGCUCCu-GGUGGCUCc -3'
miRNA:   3'- gaUGAUGGUGAUGGGGcuUCGCCGAG- -5'
27441 5' -55.1 NC_005869.1 + 17599 0.73 0.214426
Target:  5'- -cGCUGCCACcGCCaCCGGgguacGGCGGCg- -3'
miRNA:   3'- gaUGAUGGUGaUGG-GGCU-----UCGCCGag -5'
27441 5' -55.1 NC_005869.1 + 18745 0.73 0.220412
Target:  5'- -cGCUGCCGCcgccgcccccGCCCCGGcccccGCGGCUCc -3'
miRNA:   3'- gaUGAUGGUGa---------UGGGGCUu----CGCCGAG- -5'
27441 5' -55.1 NC_005869.1 + 3702 0.73 0.226539
Target:  5'- gCUGCggGCCACgGCCUCgGAGGCGGC-Cg -3'
miRNA:   3'- -GAUGa-UGGUGaUGGGG-CUUCGCCGaG- -5'
27441 5' -55.1 NC_005869.1 + 6492 0.72 0.259363
Target:  5'- -gGCUACCuc-GCCgCGGAGgGGCUCg -3'
miRNA:   3'- gaUGAUGGugaUGGgGCUUCgCCGAG- -5'
27441 5' -55.1 NC_005869.1 + 17890 0.72 0.266376
Target:  5'- cCUGCcGCCGCUGCgCCGAGGCGccacGCg- -3'
miRNA:   3'- -GAUGaUGGUGAUGgGGCUUCGC----CGag -5'
27441 5' -55.1 NC_005869.1 + 32107 0.71 0.288337
Target:  5'- aCUGCUGCCGCUGCgCCaccAGCuccaucGGCUCc -3'
miRNA:   3'- -GAUGAUGGUGAUGgGGcu-UCG------CCGAG- -5'
27441 5' -55.1 NC_005869.1 + 24455 0.71 0.311695
Target:  5'- -aGCUcaGCCGCcGCCUgGAAGCGGCc- -3'
miRNA:   3'- gaUGA--UGGUGaUGGGgCUUCGCCGag -5'
27441 5' -55.1 NC_005869.1 + 25398 0.7 0.336463
Target:  5'- aCUGCUGCCAg-ACCCCcauGGCGGUc- -3'
miRNA:   3'- -GAUGAUGGUgaUGGGGcu-UCGCCGag -5'
27441 5' -55.1 NC_005869.1 + 24187 0.7 0.353757
Target:  5'- cCUGCUGCCGCUGCUgCagugaAGGUGGCg- -3'
miRNA:   3'- -GAUGAUGGUGAUGGgGc----UUCGCCGag -5'
27441 5' -55.1 NC_005869.1 + 24625 0.7 0.361741
Target:  5'- -aGCUGCCGCgccaaccGCCCaCGAgccgacgcgcacuGGCGGCUg -3'
miRNA:   3'- gaUGAUGGUGa------UGGG-GCU-------------UCGCCGAg -5'
27441 5' -55.1 NC_005869.1 + 18792 0.7 0.362636
Target:  5'- -gGCguccgGCCGCgGCUCCGGccGCGGCUCc -3'
miRNA:   3'- gaUGa----UGGUGaUGGGGCUu-CGCCGAG- -5'
27441 5' -55.1 NC_005869.1 + 9342 0.69 0.379929
Target:  5'- uCUGCUGCUGCUGCCuCCGcggggacGGGgGGCg- -3'
miRNA:   3'- -GAUGAUGGUGAUGG-GGC-------UUCgCCGag -5'
27441 5' -55.1 NC_005869.1 + 2602 0.69 0.399673
Target:  5'- cCUGCUACaaggCGCUggACCaCCgGggGCGGCUg -3'
miRNA:   3'- -GAUGAUG----GUGA--UGG-GG-CuuCGCCGAg -5'
27441 5' -55.1 NC_005869.1 + 28524 0.68 0.459534
Target:  5'- -aAC-ACCAUcuCCUCGAAGCGGCa- -3'
miRNA:   3'- gaUGaUGGUGauGGGGCUUCGCCGag -5'
27441 5' -55.1 NC_005869.1 + 17532 0.67 0.491197
Target:  5'- -gGCgucGCCGCcgUACCCCGGuGGCGGUg- -3'
miRNA:   3'- gaUGa--UGGUG--AUGGGGCU-UCGCCGag -5'
27441 5' -55.1 NC_005869.1 + 23668 0.67 0.495496
Target:  5'- -cGCUGCCACUucuGCuCCUGAgcauccagcugcagcAGCGGC-Cg -3'
miRNA:   3'- gaUGAUGGUGA---UG-GGGCU---------------UCGCCGaG- -5'
27441 5' -55.1 NC_005869.1 + 31766 0.67 0.512857
Target:  5'- ----cACCAcCUGCCCCGc-GCGGCa- -3'
miRNA:   3'- gaugaUGGU-GAUGGGGCuuCGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.