Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27441 | 5' | -55.1 | NC_005869.1 | + | 2602 | 0.69 | 0.399673 |
Target: 5'- cCUGCUACaaggCGCUggACCaCCgGggGCGGCUg -3' miRNA: 3'- -GAUGAUG----GUGA--UGG-GG-CuuCGCCGAg -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 3595 | 0.67 | 0.523834 |
Target: 5'- gCUGCUGCUguuGCUGCUgaaCGAAGCGGg-- -3' miRNA: 3'- -GAUGAUGG---UGAUGGg--GCUUCGCCgag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 3702 | 0.73 | 0.226539 |
Target: 5'- gCUGCggGCCACgGCCUCgGAGGCGGC-Cg -3' miRNA: 3'- -GAUGa-UGGUGaUGGGG-CUUCGCCGaG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 3703 | 0.66 | 0.5349 |
Target: 5'- gCUGCUGCCGCaGCUCCGccAGCGcCUg -3' miRNA: 3'- -GAUGAUGGUGaUGGGGCu-UCGCcGAg -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 3916 | 1.1 | 0.000415 |
Target: 5'- gCUACUACCACUACCCCGAAGCGGCUCa -3' miRNA: 3'- -GAUGAUGGUGAUGGGGCUUCGCCGAG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 6492 | 0.72 | 0.259363 |
Target: 5'- -gGCUACCuc-GCCgCGGAGgGGCUCg -3' miRNA: 3'- gaUGAUGGugaUGGgGCUUCgCCGAG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 9342 | 0.69 | 0.379929 |
Target: 5'- uCUGCUGCUGCUGCCuCCGcggggacGGGgGGCg- -3' miRNA: 3'- -GAUGAUGGUGAUGG-GGC-------UUCgCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 12430 | 0.76 | 0.148603 |
Target: 5'- -gGCUGCUGCUGCUCCu-GGUGGCUCc -3' miRNA: 3'- gaUGAUGGUGAUGGGGcuUCGCCGAG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 14544 | 0.78 | 0.104737 |
Target: 5'- -aGCUACCACgugggcgaggACCCCGAGGCGGg-- -3' miRNA: 3'- gaUGAUGGUGa---------UGGGGCUUCGCCgag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 15514 | 0.66 | 0.546047 |
Target: 5'- aUGCagACCACgggggACCCCGuGGCGGa-- -3' miRNA: 3'- gAUGa-UGGUGa----UGGGGCuUCGCCgag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 17532 | 0.67 | 0.491197 |
Target: 5'- -gGCgucGCCGCcgUACCCCGGuGGCGGUg- -3' miRNA: 3'- gaUGa--UGGUG--AUGGGGCU-UCGCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 17599 | 0.73 | 0.214426 |
Target: 5'- -cGCUGCCACcGCCaCCGGgguacGGCGGCg- -3' miRNA: 3'- gaUGAUGGUGaUGG-GGCU-----UCGCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 17890 | 0.72 | 0.266376 |
Target: 5'- cCUGCcGCCGCUGCgCCGAGGCGccacGCg- -3' miRNA: 3'- -GAUGaUGGUGAUGgGGCUUCGC----CGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 18745 | 0.73 | 0.220412 |
Target: 5'- -cGCUGCCGCcgccgcccccGCCCCGGcccccGCGGCUCc -3' miRNA: 3'- gaUGAUGGUGa---------UGGGGCUu----CGCCGAG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 18792 | 0.7 | 0.362636 |
Target: 5'- -gGCguccgGCCGCgGCUCCGGccGCGGCUCc -3' miRNA: 3'- gaUGa----UGGUGaUGGGGCUu-CGCCGAG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 23234 | 0.66 | 0.557267 |
Target: 5'- gCUGC-ACCACguugcgGCCCC--AGCGGUUg -3' miRNA: 3'- -GAUGaUGGUGa-----UGGGGcuUCGCCGAg -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 23668 | 0.67 | 0.495496 |
Target: 5'- -cGCUGCCACUucuGCuCCUGAgcauccagcugcagcAGCGGC-Cg -3' miRNA: 3'- gaUGAUGGUGA---UG-GGGCU---------------UCGCCGaG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 24187 | 0.7 | 0.353757 |
Target: 5'- cCUGCUGCCGCUGCUgCagugaAGGUGGCg- -3' miRNA: 3'- -GAUGAUGGUGAUGGgGc----UUCGCCGag -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 24417 | 0.66 | 0.579894 |
Target: 5'- -cGCaGCCGCggagGCCgCCGAGGCGccCUCg -3' miRNA: 3'- gaUGaUGGUGa---UGG-GGCUUCGCc-GAG- -5' |
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27441 | 5' | -55.1 | NC_005869.1 | + | 24455 | 0.71 | 0.311695 |
Target: 5'- -aGCUcaGCCGCcGCCUgGAAGCGGCc- -3' miRNA: 3'- gaUGA--UGGUGaUGGGgCUUCGCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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