miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27443 3' -54.3 NC_005869.1 + 187 0.67 0.582651
Target:  5'- gGUGGagccCUGGGGCGGUcCUCcgCGggGCg -3'
miRNA:   3'- -CGCC----GGUCCUGCUA-GAGuaGCuuCGg -5'
27443 3' -54.3 NC_005869.1 + 443 0.66 0.662069
Target:  5'- gGCGGCCGccgcGGACc-UCUCAgcgCGAAGg- -3'
miRNA:   3'- -CGCCGGU----CCUGcuAGAGUa--GCUUCgg -5'
27443 3' -54.3 NC_005869.1 + 2115 0.66 0.62799
Target:  5'- -gGGCCGGcGGCGAUCUaaaccaGAuccGGCCc -3'
miRNA:   3'- cgCCGGUC-CUGCUAGAguag--CU---UCGG- -5'
27443 3' -54.3 NC_005869.1 + 2475 0.67 0.571402
Target:  5'- cCGGcCCGGGGUGGUCUgAUUuuAGCCa -3'
miRNA:   3'- cGCC-GGUCCUGCUAGAgUAGcuUCGG- -5'
27443 3' -54.3 NC_005869.1 + 3465 0.68 0.505307
Target:  5'- aGUGGCCGGGACGAaugugaaCggCGGAGUg -3'
miRNA:   3'- -CGCCGGUCCUGCUaga----GuaGCUUCGg -5'
27443 3' -54.3 NC_005869.1 + 5359 0.67 0.616623
Target:  5'- gGUGGCCAGGGuc--CUC-UUGAGGCUg -3'
miRNA:   3'- -CGCCGGUCCUgcuaGAGuAGCUUCGG- -5'
27443 3' -54.3 NC_005869.1 + 6612 0.69 0.46311
Target:  5'- gGCGGgCAGGA-GGUCgggGUCGAAGUa -3'
miRNA:   3'- -CGCCgGUCCUgCUAGag-UAGCUUCGg -5'
27443 3' -54.3 NC_005869.1 + 6681 0.74 0.256363
Target:  5'- gGCGGCCAGGGCGcgGUCgaagggGUUGAgggguuGGCCg -3'
miRNA:   3'- -CGCCGGUCCUGC--UAGag----UAGCU------UCGG- -5'
27443 3' -54.3 NC_005869.1 + 7088 0.71 0.357694
Target:  5'- gGUGGCCuGGACGAUgUCGU--AAGCg -3'
miRNA:   3'- -CGCCGGuCCUGCUAgAGUAgcUUCGg -5'
27443 3' -54.3 NC_005869.1 + 7538 1.13 0.000362
Target:  5'- cGCGGCCAGGACGAUCUCAUCGAAGCCc -3'
miRNA:   3'- -CGCCGGUCCUGCUAGAGUAGCUUCGG- -5'
27443 3' -54.3 NC_005869.1 + 7642 0.68 0.516117
Target:  5'- -aGGCCAGGG-GGUC-C-UCGggGUCg -3'
miRNA:   3'- cgCCGGUCCUgCUAGaGuAGCuuCGG- -5'
27443 3' -54.3 NC_005869.1 + 8106 0.67 0.605271
Target:  5'- aGCaGGUguGGGCGGUCUgGaaGAugcGGCCg -3'
miRNA:   3'- -CG-CCGguCCUGCUAGAgUagCU---UCGG- -5'
27443 3' -54.3 NC_005869.1 + 8530 0.69 0.441708
Target:  5'- gGCGGCgGcGGcCGGUCUCAggCGGgcagcugGGCCa -3'
miRNA:   3'- -CGCCGgU-CCuGCUAGAGUa-GCU-------UCGG- -5'
27443 3' -54.3 NC_005869.1 + 8859 0.68 0.525925
Target:  5'- gGCGGCCAGGucgACGGUgaugcggUUCAU-GAuGGCCa -3'
miRNA:   3'- -CGCCGGUCC---UGCUA-------GAGUAgCU-UCGG- -5'
27443 3' -54.3 NC_005869.1 + 9088 0.67 0.605271
Target:  5'- aGCGGCgCAGGGucagCUCGUUGAugucGCCc -3'
miRNA:   3'- -CGCCG-GUCCUgcuaGAGUAGCUu---CGG- -5'
27443 3' -54.3 NC_005869.1 + 11924 0.68 0.505307
Target:  5'- uUGGCCAGGGgcUGG-CUCG-CGAAGCg -3'
miRNA:   3'- cGCCGGUCCU--GCUaGAGUaGCUUCGg -5'
27443 3' -54.3 NC_005869.1 + 12750 0.72 0.307712
Target:  5'- aCGGCCAcGGGCGccCUgGaCGAGGCCa -3'
miRNA:   3'- cGCCGGU-CCUGCuaGAgUaGCUUCGG- -5'
27443 3' -54.3 NC_005869.1 + 13361 0.7 0.431715
Target:  5'- gGCGGCCGGcGGCGGcgccugggugCUCGUUcacauccuugggaGggGCCa -3'
miRNA:   3'- -CGCCGGUC-CUGCUa---------GAGUAG-------------CuuCGG- -5'
27443 3' -54.3 NC_005869.1 + 13497 0.67 0.582651
Target:  5'- gGC-GCCAGGAcCGGUUcuuUCGcuUCGAAGCg -3'
miRNA:   3'- -CGcCGGUCCU-GCUAG---AGU--AGCUUCGg -5'
27443 3' -54.3 NC_005869.1 + 14944 0.66 0.62799
Target:  5'- gGCgGGCgCAGGAgGAUCUgGUUcuccggGAAGCg -3'
miRNA:   3'- -CG-CCG-GUCCUgCUAGAgUAG------CUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.