Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 7538 | 1.13 | 0.000362 |
Target: 5'- cGCGGCCAGGACGAUCUCAUCGAAGCCc -3' miRNA: 3'- -CGCCGGUCCUGCUAGAGUAGCUUCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 13497 | 0.67 | 0.582651 |
Target: 5'- gGC-GCCAGGAcCGGUUcuuUCGcuUCGAAGCg -3' miRNA: 3'- -CGcCGGUCCU-GCUAG---AGU--AGCUUCGg -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 187 | 0.67 | 0.582651 |
Target: 5'- gGUGGagccCUGGGGCGGUcCUCcgCGggGCg -3' miRNA: 3'- -CGCC----GGUCCUGCUA-GAGuaGCuuCGg -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 21811 | 0.67 | 0.587163 |
Target: 5'- uGCGGCguGcaccagccgcaccgaGGCG---UCAUCGAGGCCg -3' miRNA: 3'- -CGCCGguC---------------CUGCuagAGUAGCUUCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 9088 | 0.67 | 0.605271 |
Target: 5'- aGCGGCgCAGGGucagCUCGUUGAugucGCCc -3' miRNA: 3'- -CGCCG-GUCCUgcuaGAGUAGCUu---CGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 8106 | 0.67 | 0.605271 |
Target: 5'- aGCaGGUguGGGCGGUCUgGaaGAugcGGCCg -3' miRNA: 3'- -CG-CCGguCCUGCUAGAgUagCU---UCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 16219 | 0.67 | 0.605271 |
Target: 5'- cGCGGCCGGaccaccaaGCGcUCUUAUgaCGAGGUCg -3' miRNA: 3'- -CGCCGGUCc-------UGCuAGAGUA--GCUUCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 5359 | 0.67 | 0.616623 |
Target: 5'- gGUGGCCAGGGuc--CUC-UUGAGGCUg -3' miRNA: 3'- -CGCCGGUCCUgcuaGAGuAGCUUCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 23044 | 0.66 | 0.662069 |
Target: 5'- aGCGGCaucagCAGGuGCG-UCUCcgCGuuGCCc -3' miRNA: 3'- -CGCCG-----GUCC-UGCuAGAGuaGCuuCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 2475 | 0.67 | 0.571402 |
Target: 5'- cCGGcCCGGGGUGGUCUgAUUuuAGCCa -3' miRNA: 3'- cGCC-GGUCCUGCUAGAgUAGcuUCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 8859 | 0.68 | 0.525925 |
Target: 5'- gGCGGCCAGGucgACGGUgaugcggUUCAU-GAuGGCCa -3' miRNA: 3'- -CGCCGGUCC---UGCUA-------GAGUAgCU-UCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 7642 | 0.68 | 0.516117 |
Target: 5'- -aGGCCAGGG-GGUC-C-UCGggGUCg -3' miRNA: 3'- cgCCGGUCCUgCUAGaGuAGCuuCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 6681 | 0.74 | 0.256363 |
Target: 5'- gGCGGCCAGGGCGcgGUCgaagggGUUGAgggguuGGCCg -3' miRNA: 3'- -CGCCGGUCCUGC--UAGag----UAGCU------UCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 26872 | 0.74 | 0.256363 |
Target: 5'- gGCGGCCAGGACGccCUCAaaaUCaGGAaCCg -3' miRNA: 3'- -CGCCGGUCCUGCuaGAGU---AG-CUUcGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 12750 | 0.72 | 0.307712 |
Target: 5'- aCGGCCAcGGGCGccCUgGaCGAGGCCa -3' miRNA: 3'- cGCCGGU-CCUGCuaGAgUaGCUUCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 7088 | 0.71 | 0.357694 |
Target: 5'- gGUGGCCuGGACGAUgUCGU--AAGCg -3' miRNA: 3'- -CGCCGGuCCUGCUAgAGUAgcUUCGg -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 8530 | 0.69 | 0.441708 |
Target: 5'- gGCGGCgGcGGcCGGUCUCAggCGGgcagcugGGCCa -3' miRNA: 3'- -CGCCGgU-CCuGCUAGAGUa-GCU-------UCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 17016 | 0.69 | 0.451831 |
Target: 5'- cCGGCCAGGcagccccgcACGGUaucccugcccgugCUCA-CGGAGCCc -3' miRNA: 3'- cGCCGGUCC---------UGCUA-------------GAGUaGCUUCGG- -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 6612 | 0.69 | 0.46311 |
Target: 5'- gGCGGgCAGGA-GGUCgggGUCGAAGUa -3' miRNA: 3'- -CGCCgGUCCUgCUAGag-UAGCUUCGg -5' |
|||||||
27443 | 3' | -54.3 | NC_005869.1 | + | 3465 | 0.68 | 0.505307 |
Target: 5'- aGUGGCCGGGACGAaugugaaCggCGGAGUg -3' miRNA: 3'- -CGCCGGUCCUGCUaga----GuaGCUUCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home