Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27444 | 3' | -58.6 | NC_005869.1 | + | 12343 | 0.66 | 0.417032 |
Target: 5'- cGCGcCGCCUGCaggaaGGuGUGCGGCccCGAGCg -3' miRNA: 3'- -CGCcGUGGGUG-----CC-CACGUCGa-GUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16622 | 0.66 | 0.417032 |
Target: 5'- cGCGGgGCUagggGCGGcGUgGguGCUgGAGCg -3' miRNA: 3'- -CGCCgUGGg---UGCC-CA-CguCGAgUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16037 | 0.66 | 0.407538 |
Target: 5'- aGCGGCG-CCugGGGcGCGuGC-CcAGCa -3' miRNA: 3'- -CGCCGUgGGugCCCaCGU-CGaGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 1959 | 0.66 | 0.398181 |
Target: 5'- uGCGGgACCa---GGUGguGCcCAAGCg -3' miRNA: 3'- -CGCCgUGGgugcCCACguCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 30941 | 0.66 | 0.398181 |
Target: 5'- -aGGCACUCugGGGcacGUAGCagAAGg -3' miRNA: 3'- cgCCGUGGGugCCCa--CGUCGagUUCg -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16832 | 0.66 | 0.398181 |
Target: 5'- gGCGGCAUgauggagACGGGgaggcuggGCAGCaccUCGGGCg -3' miRNA: 3'- -CGCCGUGgg-----UGCCCa-------CGUCG---AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16448 | 0.66 | 0.388964 |
Target: 5'- aGCGGCugCaggCugGGuGUGUGGUUCcuGCc -3' miRNA: 3'- -CGCCGugG---GugCC-CACGUCGAGuuCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 23467 | 0.66 | 0.388964 |
Target: 5'- aGUGGaACCCcuGCGGGUGCGugaUCuGGCa -3' miRNA: 3'- -CGCCgUGGG--UGCCCACGUcg-AGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 8882 | 0.66 | 0.387137 |
Target: 5'- cGCGcCGgCCACGGGgaccuggacgagGacgAGCUCGAGCa -3' miRNA: 3'- -CGCcGUgGGUGCCCa-----------Cg--UCGAGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 24961 | 0.66 | 0.379887 |
Target: 5'- cGCGGCGCaCCAgcaGGGUcugcaugaGCGuGCUCAugaccuuggguGGCa -3' miRNA: 3'- -CGCCGUG-GGUg--CCCA--------CGU-CGAGU-----------UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17608 | 0.66 | 0.379887 |
Target: 5'- gGCGGCccaucgugcuGCCCG-GGGUGC-GCuaucaucccagUCAGGCc -3' miRNA: 3'- -CGCCG----------UGGGUgCCCACGuCG-----------AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 15854 | 0.66 | 0.378987 |
Target: 5'- cGCGGCGCgagauggCCAUGgccgagcgcgucGGUGcCGGCUCAacuggGGCg -3' miRNA: 3'- -CGCCGUG-------GGUGC------------CCAC-GUCGAGU-----UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 25036 | 0.66 | 0.371839 |
Target: 5'- aGCGGCGCaagaccgucaCCGCcgccugcauggucacGGUGCAGCUCcacuGCa -3' miRNA: 3'- -CGCCGUG----------GGUGc--------------CCACGUCGAGuu--CG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 10632 | 0.66 | 0.370952 |
Target: 5'- cCGGCGCCC-UGGGcGCGGaggGGGCg -3' miRNA: 3'- cGCCGUGGGuGCCCaCGUCgagUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 23627 | 0.66 | 0.370952 |
Target: 5'- gGCaGCACCCugGaGUGCuuccggcgcggGGCcCAAGCc -3' miRNA: 3'- -CGcCGUGGGugCcCACG-----------UCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 15066 | 0.67 | 0.362163 |
Target: 5'- cGCGGCGCCgCGCGucGGUGaCGGUUacccGCu -3' miRNA: 3'- -CGCCGUGG-GUGC--CCAC-GUCGAguu-CG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 15537 | 0.67 | 0.353519 |
Target: 5'- aCGGCGCCgCGCGcG-GCGGCgcCGGGCu -3' miRNA: 3'- cGCCGUGG-GUGCcCaCGUCGa-GUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17153 | 0.67 | 0.328472 |
Target: 5'- -gGGCACCgaGCcgguGGUGCAGUccaucacggUCAAGCg -3' miRNA: 3'- cgCCGUGGg-UGc---CCACGUCG---------AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 31997 | 0.67 | 0.328472 |
Target: 5'- aCGGCcCCCACcGGaUGCAacguGCUCAcggAGCa -3' miRNA: 3'- cGCCGuGGGUGcCC-ACGU----CGAGU---UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16671 | 0.67 | 0.320419 |
Target: 5'- cGCGGCGCUggaGCGGGcgGCGGC-CGccguGCc -3' miRNA: 3'- -CGCCGUGGg--UGCCCa-CGUCGaGUu---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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