Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27444 | 3' | -58.6 | NC_005869.1 | + | 10746 | 1.14 | 0.000102 |
Target: 5'- aGCGGCACCCACGGGUGCAGCUCAAGCg -3' miRNA: 3'- -CGCCGUGGGUGCCCACGUCGAGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 9466 | 0.8 | 0.042384 |
Target: 5'- cGCGGcCGCCCuccCGGGgccGCAGCUCGaaGGCg -3' miRNA: 3'- -CGCC-GUGGGu--GCCCa--CGUCGAGU--UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 10800 | 0.79 | 0.04773 |
Target: 5'- aGCuGCACCCGUGGGUGCcGCUCGGGg -3' miRNA: 3'- -CGcCGUGGGUGCCCACGuCGAGUUCg -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 9556 | 0.73 | 0.143768 |
Target: 5'- aGCGGCACCgcgcugCGCGGGgGC-GCcuUCGAGCu -3' miRNA: 3'- -CGCCGUGG------GUGCCCaCGuCG--AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16893 | 0.72 | 0.160777 |
Target: 5'- -gGGCACCgaGCGGGUGCcGGUUCcAGUc -3' miRNA: 3'- cgCCGUGGg-UGCCCACG-UCGAGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 4603 | 0.72 | 0.160777 |
Target: 5'- aUGGCGaugggUCCGCGGGcgGCGGCgCGGGCg -3' miRNA: 3'- cGCCGU-----GGGUGCCCa-CGUCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 8557 | 0.72 | 0.160777 |
Target: 5'- cGCGGagGCCggcaCGCGGGgGCuccuGCUCGAGCg -3' miRNA: 3'- -CGCCg-UGG----GUGCCCaCGu---CGAGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 22014 | 0.71 | 0.184573 |
Target: 5'- -aGGUGCCCaggaaGCGGG-GCAGCUgGAGg -3' miRNA: 3'- cgCCGUGGG-----UGCCCaCGUCGAgUUCg -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 22784 | 0.71 | 0.189691 |
Target: 5'- cGCGGCcUCCACugacGGUGCccgAGUUCAAGUg -3' miRNA: 3'- -CGCCGuGGGUGc---CCACG---UCGAGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 11761 | 0.71 | 0.174702 |
Target: 5'- cUGGCGCCCgaGCGGGcgacGCGGaugCAGGCg -3' miRNA: 3'- cGCCGUGGG--UGCCCa---CGUCga-GUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 6530 | 0.7 | 0.229106 |
Target: 5'- gGCGGcCGCCCuuGCGGGaGCAGUagGggGGCa -3' miRNA: 3'- -CGCC-GUGGG--UGCCCaCGUCGagU--UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17538 | 0.7 | 0.200302 |
Target: 5'- cGCGGCGCgCGCGGG-GCuggaggGGCUgGGGg -3' miRNA: 3'- -CGCCGUGgGUGCCCaCG------UCGAgUUCg -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 28650 | 0.7 | 0.211426 |
Target: 5'- gGUGGCAgCgGCGGGgcGCGGUUCcuGCu -3' miRNA: 3'- -CGCCGUgGgUGCCCa-CGUCGAGuuCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 15421 | 0.7 | 0.211426 |
Target: 5'- gGCGGCGCCgGCGGcGgGUGGCgCcGGCg -3' miRNA: 3'- -CGCCGUGGgUGCC-CaCGUCGaGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 8458 | 0.7 | 0.217185 |
Target: 5'- gGUGGUGCCCuggaggcggaGGGUgGCGcggcGCUCGAGCa -3' miRNA: 3'- -CGCCGUGGGug--------CCCA-CGU----CGAGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17830 | 0.7 | 0.217185 |
Target: 5'- cGUGGCGCCU-CGGc-GCAGCggcggCAGGCg -3' miRNA: 3'- -CGCCGUGGGuGCCcaCGUCGa----GUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 200 | 0.7 | 0.223078 |
Target: 5'- gGCGGUcCuCCGCGGG-GCggGGC-CGAGCg -3' miRNA: 3'- -CGCCGuG-GGUGCCCaCG--UCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 24459 | 0.69 | 0.268205 |
Target: 5'- cGCGGCugCgC-CGGGgGCGGcCUCcuGCa -3' miRNA: 3'- -CGCCGugG-GuGCCCaCGUC-GAGuuCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 13351 | 0.69 | 0.267511 |
Target: 5'- gGCGGCGCCU--GGGUGCucGUUCAcauccuugggaggGGCc -3' miRNA: 3'- -CGCCGUGGGugCCCACGu-CGAGU-------------UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 9914 | 0.69 | 0.268205 |
Target: 5'- cGUGGCACaucugCUGCaGGaGCAGCUCAAGg -3' miRNA: 3'- -CGCCGUG-----GGUGcCCaCGUCGAGUUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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