miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27444 3' -58.6 NC_005869.1 + 31997 0.67 0.328472
Target:  5'- aCGGCcCCCACcGGaUGCAacguGCUCAcggAGCa -3'
miRNA:   3'- cGCCGuGGGUGcCC-ACGU----CGAGU---UCG- -5'
27444 3' -58.6 NC_005869.1 + 30941 0.66 0.398181
Target:  5'- -aGGCACUCugGGGcacGUAGCagAAGg -3'
miRNA:   3'- cgCCGUGGGugCCCa--CGUCGagUUCg -5'
27444 3' -58.6 NC_005869.1 + 28650 0.7 0.211426
Target:  5'- gGUGGCAgCgGCGGGgcGCGGUUCcuGCu -3'
miRNA:   3'- -CGCCGUgGgUGCCCa-CGUCGAGuuCG- -5'
27444 3' -58.6 NC_005869.1 + 25036 0.66 0.371839
Target:  5'- aGCGGCGCaagaccgucaCCGCcgccugcauggucacGGUGCAGCUCcacuGCa -3'
miRNA:   3'- -CGCCGUG----------GGUGc--------------CCACGUCGAGuu--CG- -5'
27444 3' -58.6 NC_005869.1 + 24961 0.66 0.379887
Target:  5'- cGCGGCGCaCCAgcaGGGUcugcaugaGCGuGCUCAugaccuuggguGGCa -3'
miRNA:   3'- -CGCCGUG-GGUg--CCCA--------CGU-CGAGU-----------UCG- -5'
27444 3' -58.6 NC_005869.1 + 24459 0.69 0.268205
Target:  5'- cGCGGCugCgC-CGGGgGCGGcCUCcuGCa -3'
miRNA:   3'- -CGCCGugG-GuGCCCaCGUC-GAGuuCG- -5'
27444 3' -58.6 NC_005869.1 + 23627 0.66 0.370952
Target:  5'- gGCaGCACCCugGaGUGCuuccggcgcggGGCcCAAGCc -3'
miRNA:   3'- -CGcCGUGGGugCcCACG-----------UCGaGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 23467 0.66 0.388964
Target:  5'- aGUGGaACCCcuGCGGGUGCGugaUCuGGCa -3'
miRNA:   3'- -CGCCgUGGG--UGCCCACGUcg-AGuUCG- -5'
27444 3' -58.6 NC_005869.1 + 22784 0.71 0.189691
Target:  5'- cGCGGCcUCCACugacGGUGCccgAGUUCAAGUg -3'
miRNA:   3'- -CGCCGuGGGUGc---CCACG---UCGAGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 22014 0.71 0.184573
Target:  5'- -aGGUGCCCaggaaGCGGG-GCAGCUgGAGg -3'
miRNA:   3'- cgCCGUGGG-----UGCCCaCGUCGAgUUCg -5'
27444 3' -58.6 NC_005869.1 + 20723 0.68 0.282386
Target:  5'- aGCGGCcguuGCCCAggagcUGGGagcgGUAGCgCAGGCc -3'
miRNA:   3'- -CGCCG----UGGGU-----GCCCa---CGUCGaGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 17830 0.7 0.217185
Target:  5'- cGUGGCGCCU-CGGc-GCAGCggcggCAGGCg -3'
miRNA:   3'- -CGCCGUGGGuGCCcaCGUCGa----GUUCG- -5'
27444 3' -58.6 NC_005869.1 + 17608 0.66 0.379887
Target:  5'- gGCGGCccaucgugcuGCCCG-GGGUGC-GCuaucaucccagUCAGGCc -3'
miRNA:   3'- -CGCCG----------UGGGUgCCCACGuCG-----------AGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 17538 0.7 0.200302
Target:  5'- cGCGGCGCgCGCGGG-GCuggaggGGCUgGGGg -3'
miRNA:   3'- -CGCCGUGgGUGCCCaCG------UCGAgUUCg -5'
27444 3' -58.6 NC_005869.1 + 17447 0.68 0.304761
Target:  5'- cCGGCGCCCGCG---GCGGUUCcGGUg -3'
miRNA:   3'- cGCCGUGGGUGCccaCGUCGAGuUCG- -5'
27444 3' -58.6 NC_005869.1 + 17153 0.67 0.328472
Target:  5'- -gGGCACCgaGCcgguGGUGCAGUccaucacggUCAAGCg -3'
miRNA:   3'- cgCCGUGGg-UGc---CCACGUCG---------AGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 17039 0.68 0.312515
Target:  5'- aCGGC-CCUGCGGGgcacGCGGCgCGGGg -3'
miRNA:   3'- cGCCGuGGGUGCCCa---CGUCGaGUUCg -5'
27444 3' -58.6 NC_005869.1 + 16945 0.68 0.282386
Target:  5'- cCGGCACCCGCucGGUGCccaUCAGcGCg -3'
miRNA:   3'- cGCCGUGGGUGc-CCACGucgAGUU-CG- -5'
27444 3' -58.6 NC_005869.1 + 16893 0.72 0.160777
Target:  5'- -gGGCACCgaGCGGGUGCcGGUUCcAGUc -3'
miRNA:   3'- cgCCGUGGg-UGCCCACG-UCGAGuUCG- -5'
27444 3' -58.6 NC_005869.1 + 16832 0.66 0.398181
Target:  5'- gGCGGCAUgauggagACGGGgaggcuggGCAGCaccUCGGGCg -3'
miRNA:   3'- -CGCCGUGgg-----UGCCCa-------CGUCG---AGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.