Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27444 | 3' | -58.6 | NC_005869.1 | + | 1959 | 0.66 | 0.398181 |
Target: 5'- uGCGGgACCa---GGUGguGCcCAAGCg -3' miRNA: 3'- -CGCCgUGGgugcCCACguCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 8521 | 0.68 | 0.304761 |
Target: 5'- cGCGGCcUCgGCGGcG-GCGGCcggucUCAGGCg -3' miRNA: 3'- -CGCCGuGGgUGCC-CaCGUCG-----AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 10854 | 0.68 | 0.312515 |
Target: 5'- uGCGGUuCCgCGCGGGgcgggagaUGCAGCUgGaccgggAGCg -3' miRNA: 3'- -CGCCGuGG-GUGCCC--------ACGUCGAgU------UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16671 | 0.67 | 0.320419 |
Target: 5'- cGCGGCGCUggaGCGGGcgGCGGC-CGccguGCc -3' miRNA: 3'- -CGCCGUGGg--UGCCCa-CGUCGaGUu---CG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17153 | 0.67 | 0.328472 |
Target: 5'- -gGGCACCgaGCcgguGGUGCAGUccaucacggUCAAGCg -3' miRNA: 3'- cgCCGUGGg-UGc---CCACGUCG---------AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 31997 | 0.67 | 0.328472 |
Target: 5'- aCGGCcCCCACcGGaUGCAacguGCUCAcggAGCa -3' miRNA: 3'- cGCCGuGGGUGcCC-ACGU----CGAGU---UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 10632 | 0.66 | 0.370952 |
Target: 5'- cCGGCGCCC-UGGGcGCGGaggGGGCg -3' miRNA: 3'- cGCCGUGGGuGCCCaCGUCgagUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 25036 | 0.66 | 0.371839 |
Target: 5'- aGCGGCGCaagaccgucaCCGCcgccugcauggucacGGUGCAGCUCcacuGCa -3' miRNA: 3'- -CGCCGUG----------GGUGc--------------CCACGUCGAGuu--CG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17608 | 0.66 | 0.379887 |
Target: 5'- gGCGGCccaucgugcuGCCCG-GGGUGC-GCuaucaucccagUCAGGCc -3' miRNA: 3'- -CGCCG----------UGGGUgCCCACGuCG-----------AGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17447 | 0.68 | 0.304761 |
Target: 5'- cCGGCGCCCGCG---GCGGUUCcGGUg -3' miRNA: 3'- cGCCGUGGGUGCccaCGUCGAGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 8842 | 0.68 | 0.304761 |
Target: 5'- cCGGCGCgcuCCACGGuG-GCGGC-CAGGUc -3' miRNA: 3'- cGCCGUG---GGUGCC-CaCGUCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 2611 | 0.69 | 0.261332 |
Target: 5'- -aGGCGCuggaCCAcCGGGgGCGGCUguGGCu -3' miRNA: 3'- cgCCGUG----GGU-GCCCaCGUCGAguUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 9466 | 0.8 | 0.042384 |
Target: 5'- cGCGGcCGCCCuccCGGGgccGCAGCUCGaaGGCg -3' miRNA: 3'- -CGCC-GUGGGu--GCCCa--CGUCGAGU--UCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 16893 | 0.72 | 0.160777 |
Target: 5'- -gGGCACCgaGCGGGUGCcGGUUCcAGUc -3' miRNA: 3'- cgCCGUGGg-UGCCCACG-UCGAGuUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 4603 | 0.72 | 0.160777 |
Target: 5'- aUGGCGaugggUCCGCGGGcgGCGGCgCGGGCg -3' miRNA: 3'- cGCCGU-----GGGUGCCCa-CGUCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 11761 | 0.71 | 0.174702 |
Target: 5'- cUGGCGCCCgaGCGGGcgacGCGGaugCAGGCg -3' miRNA: 3'- cGCCGUGGG--UGCCCa---CGUCga-GUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 8458 | 0.7 | 0.217185 |
Target: 5'- gGUGGUGCCCuggaggcggaGGGUgGCGcggcGCUCGAGCa -3' miRNA: 3'- -CGCCGUGGGug--------CCCA-CGU----CGAGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 17830 | 0.7 | 0.217185 |
Target: 5'- cGUGGCGCCU-CGGc-GCAGCggcggCAGGCg -3' miRNA: 3'- -CGCCGUGGGuGCCcaCGUCGa----GUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 200 | 0.7 | 0.223078 |
Target: 5'- gGCGGUcCuCCGCGGG-GCggGGC-CGAGCg -3' miRNA: 3'- -CGCCGuG-GGUGCCCaCG--UCGaGUUCG- -5' |
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27444 | 3' | -58.6 | NC_005869.1 | + | 6530 | 0.7 | 0.229106 |
Target: 5'- gGCGGcCGCCCuuGCGGGaGCAGUagGggGGCa -3' miRNA: 3'- -CGCC-GUGGG--UGCCCaCGUCGagU--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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