miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27444 3' -58.6 NC_005869.1 + 12343 0.66 0.417032
Target:  5'- cGCGcCGCCUGCaggaaGGuGUGCGGCccCGAGCg -3'
miRNA:   3'- -CGCcGUGGGUG-----CC-CACGUCGa-GUUCG- -5'
27444 3' -58.6 NC_005869.1 + 20723 0.68 0.282386
Target:  5'- aGCGGCcguuGCCCAggagcUGGGagcgGUAGCgCAGGCc -3'
miRNA:   3'- -CGCCG----UGGGU-----GCCCa---CGUCGaGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 24459 0.69 0.268205
Target:  5'- cGCGGCugCgC-CGGGgGCGGcCUCcuGCa -3'
miRNA:   3'- -CGCCGugG-GuGCCCaCGUC-GAGuuCG- -5'
27444 3' -58.6 NC_005869.1 + 10800 0.79 0.04773
Target:  5'- aGCuGCACCCGUGGGUGCcGCUCGGGg -3'
miRNA:   3'- -CGcCGUGGGUGCCCACGuCGAGUUCg -5'
27444 3' -58.6 NC_005869.1 + 30941 0.66 0.398181
Target:  5'- -aGGCACUCugGGGcacGUAGCagAAGg -3'
miRNA:   3'- cgCCGUGGGugCCCa--CGUCGagUUCg -5'
27444 3' -58.6 NC_005869.1 + 16448 0.66 0.388964
Target:  5'- aGCGGCugCaggCugGGuGUGUGGUUCcuGCc -3'
miRNA:   3'- -CGCCGugG---GugCC-CACGUCGAGuuCG- -5'
27444 3' -58.6 NC_005869.1 + 8882 0.66 0.387137
Target:  5'- cGCGcCGgCCACGGGgaccuggacgagGacgAGCUCGAGCa -3'
miRNA:   3'- -CGCcGUgGGUGCCCa-----------Cg--UCGAGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 24961 0.66 0.379887
Target:  5'- cGCGGCGCaCCAgcaGGGUcugcaugaGCGuGCUCAugaccuuggguGGCa -3'
miRNA:   3'- -CGCCGUG-GGUg--CCCA--------CGU-CGAGU-----------UCG- -5'
27444 3' -58.6 NC_005869.1 + 15066 0.67 0.362163
Target:  5'- cGCGGCGCCgCGCGucGGUGaCGGUUacccGCu -3'
miRNA:   3'- -CGCCGUGG-GUGC--CCAC-GUCGAguu-CG- -5'
27444 3' -58.6 NC_005869.1 + 16945 0.68 0.282386
Target:  5'- cCGGCACCCGCucGGUGCccaUCAGcGCg -3'
miRNA:   3'- cGCCGUGGGUGc-CCACGucgAGUU-CG- -5'
27444 3' -58.6 NC_005869.1 + 12191 0.67 0.320419
Target:  5'- cGCGGCcaggcuGCCCA-GGuUGUuggcGCUCGAGCg -3'
miRNA:   3'- -CGCCG------UGGGUgCCcACGu---CGAGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 23627 0.66 0.370952
Target:  5'- gGCaGCACCCugGaGUGCuuccggcgcggGGCcCAAGCc -3'
miRNA:   3'- -CGcCGUGGGugCcCACG-----------UCGaGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 16622 0.66 0.417032
Target:  5'- cGCGGgGCUagggGCGGcGUgGguGCUgGAGCg -3'
miRNA:   3'- -CGCCgUGGg---UGCC-CA-CguCGAgUUCG- -5'
27444 3' -58.6 NC_005869.1 + 14678 0.68 0.312515
Target:  5'- gGCGGUGCCCGuggcCGGGUccccGUAGUUgUAGGCc -3'
miRNA:   3'- -CGCCGUGGGU----GCCCA----CGUCGA-GUUCG- -5'
27444 3' -58.6 NC_005869.1 + 16037 0.66 0.407538
Target:  5'- aGCGGCG-CCugGGGcGCGuGC-CcAGCa -3'
miRNA:   3'- -CGCCGUgGGugCCCaCGU-CGaGuUCG- -5'
27444 3' -58.6 NC_005869.1 + 15854 0.66 0.378987
Target:  5'- cGCGGCGCgagauggCCAUGgccgagcgcgucGGUGcCGGCUCAacuggGGCg -3'
miRNA:   3'- -CGCCGUG-------GGUGC------------CCAC-GUCGAGU-----UCG- -5'
27444 3' -58.6 NC_005869.1 + 17039 0.68 0.312515
Target:  5'- aCGGC-CCUGCGGGgcacGCGGCgCGGGg -3'
miRNA:   3'- cGCCGuGGGUGCCCa---CGUCGaGUUCg -5'
27444 3' -58.6 NC_005869.1 + 9914 0.69 0.268205
Target:  5'- cGUGGCACaucugCUGCaGGaGCAGCUCAAGg -3'
miRNA:   3'- -CGCCGUG-----GGUGcCCaCGUCGAGUUCg -5'
27444 3' -58.6 NC_005869.1 + 16832 0.66 0.398181
Target:  5'- gGCGGCAUgauggagACGGGgaggcuggGCAGCaccUCGGGCg -3'
miRNA:   3'- -CGCCGUGgg-----UGCCCa-------CGUCG---AGUUCG- -5'
27444 3' -58.6 NC_005869.1 + 23467 0.66 0.388964
Target:  5'- aGUGGaACCCcuGCGGGUGCGugaUCuGGCa -3'
miRNA:   3'- -CGCCgUGGG--UGCCCACGUcg-AGuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.