miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27445 5' -66.5 NC_005869.1 + 22376 0.66 0.162001
Target:  5'- cGGGaUUGUAGGCCauggggCUGUcGGGGuAGCGg -3'
miRNA:   3'- -CCC-GACGUCCGGg-----GGCGaCCCC-UCGC- -5'
27445 5' -66.5 NC_005869.1 + 17267 0.66 0.153637
Target:  5'- uGGGCaccaaCAcGCCCCgGCUGaGGAGCGc -3'
miRNA:   3'- -CCCGac---GUcCGGGGgCGACcCCUCGC- -5'
27445 5' -66.5 NC_005869.1 + 5735 0.66 0.153637
Target:  5'- aGGCUGuCGGuGUCCCCGUagacGGAGCGc -3'
miRNA:   3'- cCCGAC-GUC-CGGGGGCGacc-CCUCGC- -5'
27445 5' -66.5 NC_005869.1 + 15266 0.66 0.149603
Target:  5'- aGGCgGCGGgcGCCCCCGUacauGGAGCGc -3'
miRNA:   3'- cCCGaCGUC--CGGGGGCGacc-CCUCGC- -5'
27445 5' -66.5 NC_005869.1 + 23721 0.66 0.141824
Target:  5'- cGGGCUcgGGGUCaCCgggCGC-GGGGGGCGg -3'
miRNA:   3'- -CCCGAcgUCCGG-GG---GCGaCCCCUCGC- -5'
27445 5' -66.5 NC_005869.1 + 13293 0.67 0.130495
Target:  5'- aGGCUGUcGGCg-CCGCUGGccaggcuGGAGCGg -3'
miRNA:   3'- cCCGACGuCCGggGGCGACC-------CCUCGC- -5'
27445 5' -66.5 NC_005869.1 + 16239 0.67 0.114283
Target:  5'- cGGCgagggGCGGGCCCgCCGCUGccgccGGGCu -3'
miRNA:   3'- cCCGa----CGUCCGGG-GGCGACcc---CUCGc -5'
27445 5' -66.5 NC_005869.1 + 17630 0.68 0.111214
Target:  5'- aGGGC-GgGGGaCCgCCGCUGcGGGcgGGCGg -3'
miRNA:   3'- -CCCGaCgUCC-GGgGGCGAC-CCC--UCGC- -5'
27445 5' -66.5 NC_005869.1 + 24994 0.68 0.102464
Target:  5'- gGGGCgucucGCCCUCGUcGGGGAGUGg -3'
miRNA:   3'- -CCCGacgucCGGGGGCGaCCCCUCGC- -5'
27445 5' -66.5 NC_005869.1 + 8313 0.69 0.086875
Target:  5'- cGGCggcGCGGGCCagcuccaCCGCggucUGGGGGGUa -3'
miRNA:   3'- cCCGa--CGUCCGGg------GGCG----ACCCCUCGc -5'
27445 5' -66.5 NC_005869.1 + 15592 0.69 0.08592
Target:  5'- cGGCggcGCAGGCgCUCCGCgccggccauccugGGGGuGCGc -3'
miRNA:   3'- cCCGa--CGUCCG-GGGGCGa------------CCCCuCGC- -5'
27445 5' -66.5 NC_005869.1 + 25914 0.69 0.079953
Target:  5'- aGGGCggugGCAGGgUgCCGUcgggcuUGGGGGGCc -3'
miRNA:   3'- -CCCGa---CGUCCgGgGGCG------ACCCCUCGc -5'
27445 5' -66.5 NC_005869.1 + 9347 0.7 0.077765
Target:  5'- -uGCUGCu-GCCUCCGCggggacGGGGGGCGc -3'
miRNA:   3'- ccCGACGucCGGGGGCGa-----CCCCUCGC- -5'
27445 5' -66.5 NC_005869.1 + 7997 0.7 0.075635
Target:  5'- aGGCgGCGGGUgCCCuCgGGGGAGCc -3'
miRNA:   3'- cCCGaCGUCCGgGGGcGaCCCCUCGc -5'
27445 5' -66.5 NC_005869.1 + 16358 0.7 0.069574
Target:  5'- cGGCUGU-GGCCguCCCGCUGGaGGAagGCa -3'
miRNA:   3'- cCCGACGuCCGG--GGGCGACC-CCU--CGc -5'
27445 5' -66.5 NC_005869.1 + 24478 0.7 0.067659
Target:  5'- aGGGCgccucgGC-GGCCUCCGCggcugcgccGGGGGCGg -3'
miRNA:   3'- -CCCGa-----CGuCCGGGGGCGac-------CCCUCGC- -5'
27445 5' -66.5 NC_005869.1 + 3186 0.72 0.046834
Target:  5'- -cGCUGCGGGCCCCCcggucccuggugaGCUgcaacuggGGGGAGUu -3'
miRNA:   3'- ccCGACGUCCGGGGG-------------CGA--------CCCCUCGc -5'
27445 5' -66.5 NC_005869.1 + 23060 0.75 0.026618
Target:  5'- gGGGCUGCcgccaGGuGCCCCUGCUGGGccGGCa -3'
miRNA:   3'- -CCCGACG-----UC-CGGGGGCGACCCc-UCGc -5'
27445 5' -66.5 NC_005869.1 + 8226 0.76 0.025141
Target:  5'- gGGGCgGCGGGCCCUCGggcGGGGGGUc -3'
miRNA:   3'- -CCCGaCGUCCGGGGGCga-CCCCUCGc -5'
27445 5' -66.5 NC_005869.1 + 12368 1.08 0.000048
Target:  5'- gGGGCUGCAGGCCCCCGCUGGGGAGCGc -3'
miRNA:   3'- -CCCGACGUCCGGGGGCGACCCCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.