Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 15260 | 1.08 | 0.000152 |
Target: 5'- gACGCCACUACCGGGCCAACUGGGCCAg -3' miRNA: 3'- -UGCGGUGAUGGCCCGGUUGACCCGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 13224 | 0.75 | 0.063586 |
Target: 5'- cGCGCCGCUccaGCCuGGCCAGC-GGcGCCGa -3' miRNA: 3'- -UGCGGUGA---UGGcCCGGUUGaCC-CGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 1980 | 0.74 | 0.077882 |
Target: 5'- cUGCCACUGCCGGaugaCCcACUGGGCa- -3' miRNA: 3'- uGCGGUGAUGGCCc---GGuUGACCCGgu -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 17495 | 0.71 | 0.119502 |
Target: 5'- cCGCCGCgggcGCCGGGCCAccggaaccACcgGGGCg- -3' miRNA: 3'- uGCGGUGa---UGGCCCGGU--------UGa-CCCGgu -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 15828 | 0.71 | 0.130013 |
Target: 5'- cGCGUCGgUGCCGGcUCAACUGGGgCGc -3' miRNA: 3'- -UGCGGUgAUGGCCcGGUUGACCCgGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 14810 | 0.7 | 0.132585 |
Target: 5'- -gGCUACcACCGGGUaguugcucggcgucUGGCUGGGCCGg -3' miRNA: 3'- ugCGGUGaUGGCCCG--------------GUUGACCCGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 32335 | 0.7 | 0.133702 |
Target: 5'- -aGCgCACggGCCGGGCac-CUGGGCCc -3' miRNA: 3'- ugCG-GUGa-UGGCCCGguuGACCCGGu -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 18841 | 0.7 | 0.134076 |
Target: 5'- -aGCCGCgGCCGGacGCCGACgcacaggagccgcggGGGCCGg -3' miRNA: 3'- ugCGGUGaUGGCC--CGGUUGa--------------CCCGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 23712 | 0.7 | 0.153632 |
Target: 5'- -gGCCACcGCCGGGCUcg--GGGUCAc -3' miRNA: 3'- ugCGGUGaUGGCCCGGuugaCCCGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 7624 | 0.69 | 0.157928 |
Target: 5'- gGCGCCGCaGCUGGGCauaGGCcaggGGGUCc -3' miRNA: 3'- -UGCGGUGaUGGCCCGg--UUGa---CCCGGu -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 8963 | 0.69 | 0.162333 |
Target: 5'- cGCGCaugACUACCuGGGCCggUUGaGcGCCAc -3' miRNA: 3'- -UGCGg--UGAUGG-CCCGGuuGAC-C-CGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 26620 | 0.69 | 0.164126 |
Target: 5'- gGCGCCGCUACCGccacgacauccucucGGCCcuggaguACUGcGCCGg -3' miRNA: 3'- -UGCGGUGAUGGC---------------CCGGu------UGACcCGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 15364 | 0.69 | 0.170076 |
Target: 5'- gGCGCCACccgccGCCGGcGCCGccaucgucgacgucGgaGGGCCGc -3' miRNA: 3'- -UGCGGUGa----UGGCC-CGGU--------------UgaCCCGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 16688 | 0.69 | 0.171476 |
Target: 5'- gGCGCCACgacgGCCugGGGCCGGCccgcccggcgcGGaGCCAg -3' miRNA: 3'- -UGCGGUGa---UGG--CCCGGUUGa----------CC-CGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 8573 | 0.69 | 0.176218 |
Target: 5'- cCGCCGCcGCCGaGGCCG-CgGaGGCCGg -3' miRNA: 3'- uGCGGUGaUGGC-CCGGUuGaC-CCGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 21034 | 0.69 | 0.181076 |
Target: 5'- -aGCCGCaACUGGGCCGccuuccgcgGCUGGaGCUu -3' miRNA: 3'- ugCGGUGaUGGCCCGGU---------UGACC-CGGu -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 23058 | 0.68 | 0.191149 |
Target: 5'- -gGCUGCcGCCaGGuGCCccuGCUGGGCCGg -3' miRNA: 3'- ugCGGUGaUGG-CC-CGGu--UGACCCGGU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 17118 | 0.68 | 0.20171 |
Target: 5'- gGCGaCCGCggugGCCGGGCCgGGCUccgugagcacGGGCa- -3' miRNA: 3'- -UGC-GGUGa---UGGCCCGG-UUGA----------CCCGgu -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 10623 | 0.68 | 0.20171 |
Target: 5'- -aGCCGCcgGCCGGcGCC--CUGGGCgCGg -3' miRNA: 3'- ugCGGUGa-UGGCC-CGGuuGACCCG-GU- -5' |
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27453 | 3' | -61.2 | NC_005869.1 | + | 3504 | 0.68 | 0.207179 |
Target: 5'- -gGCCACUcccugacgcacGCCGGcCCAGCUGGGaagaCGa -3' miRNA: 3'- ugCGGUGA-----------UGGCCcGGUUGACCCg---GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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