Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 15260 | 1.08 | 0.000152 |
Target: 5'- gACGCCACUACCGGGCCAACUGGGCCAg -3' miRNA: 3'- -UGCGGUGAUGGCCCGGUUGACCCGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 28545 | 0.66 | 0.274012 |
Target: 5'- cCGCCAUgguccGCCuGGCCAACUGGauaguggaucagauGCCc -3' miRNA: 3'- uGCGGUGa----UGGcCCGGUUGACC--------------CGGu -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 16619 | 0.66 | 0.255663 |
Target: 5'- cGCGCCG--GgCGGGCCGGCcccaGGCCGu -3' miRNA: 3'- -UGCGGUgaUgGCCCGGUUGac--CCGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 22048 | 0.67 | 0.224357 |
Target: 5'- cCGCCAC-ACCGgaGGCCGccACUGgcuGGCCGu -3' miRNA: 3'- uGCGGUGaUGGC--CCGGU--UGAC---CCGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 33562 | 0.67 | 0.2185 |
Target: 5'- -aGUCAgcACCGcGGCCAGCagcagucggucgUGGGCCAu -3' miRNA: 3'- ugCGGUgaUGGC-CCGGUUG------------ACCCGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 8539 | 0.68 | 0.207179 |
Target: 5'- -gGCCGgUcucaGgCGGG-CAGCUGGGCCAg -3' miRNA: 3'- ugCGGUgA----UgGCCCgGUUGACCCGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 10623 | 0.68 | 0.20171 |
Target: 5'- -aGCCGCcgGCCGGcGCC--CUGGGCgCGg -3' miRNA: 3'- ugCGGUGa-UGGCC-CGGuuGACCCG-GU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 21034 | 0.69 | 0.181076 |
Target: 5'- -aGCCGCaACUGGGCCGccuuccgcgGCUGGaGCUu -3' miRNA: 3'- ugCGGUGaUGGCCCGGU---------UGACC-CGGu -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 15364 | 0.69 | 0.170076 |
Target: 5'- gGCGCCACccgccGCCGGcGCCGccaucgucgacgucGgaGGGCCGc -3' miRNA: 3'- -UGCGGUGa----UGGCC-CGGU--------------UgaCCCGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 26620 | 0.69 | 0.164126 |
Target: 5'- gGCGCCGCUACCGccacgacauccucucGGCCcuggaguACUGcGCCGg -3' miRNA: 3'- -UGCGGUGAUGGC---------------CCGGu------UGACcCGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 8963 | 0.69 | 0.162333 |
Target: 5'- cGCGCaugACUACCuGGGCCggUUGaGcGCCAc -3' miRNA: 3'- -UGCGg--UGAUGG-CCCGGuuGAC-C-CGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 7624 | 0.69 | 0.157928 |
Target: 5'- gGCGCCGCaGCUGGGCauaGGCcaggGGGUCc -3' miRNA: 3'- -UGCGGUGaUGGCCCGg--UUGa---CCCGGu -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 23712 | 0.7 | 0.153632 |
Target: 5'- -gGCCACcGCCGGGCUcg--GGGUCAc -3' miRNA: 3'- ugCGGUGaUGGCCCGGuugaCCCGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 13224 | 0.75 | 0.063586 |
Target: 5'- cGCGCCGCUccaGCCuGGCCAGC-GGcGCCGa -3' miRNA: 3'- -UGCGGUGA---UGGcCCGGUUGaCC-CGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 3504 | 0.68 | 0.207179 |
Target: 5'- -gGCCACUcccugacgcacGCCGGcCCAGCUGGGaagaCGa -3' miRNA: 3'- ugCGGUGA-----------UGGCCcGGUUGACCCg---GU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 10134 | 0.66 | 0.255663 |
Target: 5'- aGCcCCACUACCagguGGUCAACUGGuCCGu -3' miRNA: 3'- -UGcGGUGAUGGc---CCGGUUGACCcGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 26827 | 0.66 | 0.255663 |
Target: 5'- cCGCCGCUGCUGcGGCCuucCUGGagaucGCUg -3' miRNA: 3'- uGCGGUGAUGGC-CCGGuu-GACC-----CGGu -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 16224 | 0.66 | 0.276114 |
Target: 5'- cCGCCGCUgccGCCGGGCUcuCUu-GCCAu -3' miRNA: 3'- uGCGGUGA---UGGCCCGGuuGAccCGGU- -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 24911 | 0.66 | 0.283216 |
Target: 5'- aGCGCCAggGCCGGGUaggcgAAgUGGGUg- -3' miRNA: 3'- -UGCGGUgaUGGCCCGg----UUgACCCGgu -5' |
|||||||
27453 | 3' | -61.2 | NC_005869.1 | + | 1980 | 0.74 | 0.077882 |
Target: 5'- cUGCCACUGCCGGaugaCCcACUGGGCa- -3' miRNA: 3'- uGCGGUGAUGGCCc---GGuUGACCCGgu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home