miRNA display CGI


Results 21 - 40 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27464 3' -64 NC_005869.1 + 25775 0.74 0.052814
Target:  5'- gCACCGCUGCCucGCCACCaacaCCGCCCuccucaACGa -3'
miRNA:   3'- -GUGGUGGCGG--CGGUGGa---GGCGGG------UGC- -5'
27464 3' -64 NC_005869.1 + 27833 0.74 0.054953
Target:  5'- gCACCACCGaaGCCAucgcccgcggcgaccUCUCCGUCCGCu -3'
miRNA:   3'- -GUGGUGGCggCGGU---------------GGAGGCGGGUGc -5'
27464 3' -64 NC_005869.1 + 18559 0.74 0.057337
Target:  5'- cCGCCAagcgcCCGCCGCCGCCcaggagaucaucaUCCGCuCCgACGa -3'
miRNA:   3'- -GUGGU-----GGCGGCGGUGG-------------AGGCG-GG-UGC- -5'
27464 3' -64 NC_005869.1 + 25746 0.73 0.059149
Target:  5'- uGCUACUGCCGCUgcaACCUCUGCgCACc -3'
miRNA:   3'- gUGGUGGCGGCGG---UGGAGGCGgGUGc -5'
27464 3' -64 NC_005869.1 + 16650 0.73 0.060844
Target:  5'- gCACCACCGCCGUCAgCCgcacCUGCCUggguguGCGg -3'
miRNA:   3'- -GUGGUGGCGGCGGU-GGa---GGCGGG------UGC- -5'
27464 3' -64 NC_005869.1 + 25736 0.73 0.064377
Target:  5'- gGCCcgcGCCGCCGggcCCACCUUCGUCCAgGu -3'
miRNA:   3'- gUGG---UGGCGGC---GGUGGAGGCGGGUgC- -5'
27464 3' -64 NC_005869.1 + 25181 0.73 0.064377
Target:  5'- gCAUCACCgucgaccugGCCGCCACCguggagcgcgCCGgCCACGg -3'
miRNA:   3'- -GUGGUGG---------CGGCGGUGGa---------GGCgGGUGC- -5'
27464 3' -64 NC_005869.1 + 22727 0.73 0.066216
Target:  5'- uCGCCACCgaguaguugaugGCCGCCACCUucUCGCUCAgGc -3'
miRNA:   3'- -GUGGUGG------------CGGCGGUGGA--GGCGGGUgC- -5'
27464 3' -64 NC_005869.1 + 27929 0.72 0.070049
Target:  5'- aGCgACCGCCGCCACCcgauggagaCCGCaCCAUc -3'
miRNA:   3'- gUGgUGGCGGCGGUGGa--------GGCG-GGUGc -5'
27464 3' -64 NC_005869.1 + 23898 0.72 0.072044
Target:  5'- gGCCGCgCGCuUGCgGCCUCC-CCCGCGc -3'
miRNA:   3'- gUGGUG-GCG-GCGgUGGAGGcGGGUGC- -5'
27464 3' -64 NC_005869.1 + 22063 0.72 0.074095
Target:  5'- cCGCCACUggcugGCCGUCGCCUgggagcCCGCCuCGCGc -3'
miRNA:   3'- -GUGGUGG-----CGGCGGUGGA------GGCGG-GUGC- -5'
27464 3' -64 NC_005869.1 + 12762 0.72 0.078364
Target:  5'- gGCCACCGUguaGCCcuCC-CCGUCCACGg -3'
miRNA:   3'- gUGGUGGCGg--CGGu-GGaGGCGGGUGC- -5'
27464 3' -64 NC_005869.1 + 28330 0.72 0.078364
Target:  5'- cUACUACCGCCGCUacgugcugGCCaCCGCCCucauCGu -3'
miRNA:   3'- -GUGGUGGCGGCGG--------UGGaGGCGGGu---GC- -5'
27464 3' -64 NC_005869.1 + 24496 0.72 0.080586
Target:  5'- aCGCCGCCGCggCGCCaggagaacggaACCUgCGCCC-CGg -3'
miRNA:   3'- -GUGGUGGCG--GCGG-----------UGGAgGCGGGuGC- -5'
27464 3' -64 NC_005869.1 + 22263 0.71 0.084974
Target:  5'- gCGCCGCCugcggacucuucuGCCuccucuuccucGCCGCCUuuGCCCGCu -3'
miRNA:   3'- -GUGGUGG-------------CGG-----------CGGUGGAggCGGGUGc -5'
27464 3' -64 NC_005869.1 + 26621 0.71 0.085211
Target:  5'- gCGCCGCUaCCGCCACgacauccuCUCgGCCCugGa -3'
miRNA:   3'- -GUGGUGGcGGCGGUG--------GAGgCGGGugC- -5'
27464 3' -64 NC_005869.1 + 24625 0.71 0.087618
Target:  5'- aGCUGCCG-CGCCAa--CCGCCCACGa -3'
miRNA:   3'- gUGGUGGCgGCGGUggaGGCGGGUGC- -5'
27464 3' -64 NC_005869.1 + 9227 0.71 0.090089
Target:  5'- gGCCACCGCCuGCCgcACCUCCuCCUcuaaggaggGCGg -3'
miRNA:   3'- gUGGUGGCGG-CGG--UGGAGGcGGG---------UGC- -5'
27464 3' -64 NC_005869.1 + 16026 0.71 0.090089
Target:  5'- cCACCuACCGCCcgguGCCAgCCU-CGCCUACGu -3'
miRNA:   3'- -GUGG-UGGCGG----CGGU-GGAgGCGGGUGC- -5'
27464 3' -64 NC_005869.1 + 33812 0.71 0.091604
Target:  5'- cCACCugugcgggaauuuCCGCCGCUcgGCC-CCGCcCCGCGg -3'
miRNA:   3'- -GUGGu------------GGCGGCGG--UGGaGGCG-GGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.