miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27464 3' -64 NC_005869.1 + 24094 1.07 0.000116
Target:  5'- cCACCACCGCCGCCACCUCCGCCCACGu -3'
miRNA:   3'- -GUGGUGGCGGCGGUGGAGGCGGGUGC- -5'
27464 3' -64 NC_005869.1 + 18744 0.87 0.005255
Target:  5'- cCGCUGCCGCCGCCGCCcCCGCCC-CGg -3'
miRNA:   3'- -GUGGUGGCGGCGGUGGaGGCGGGuGC- -5'
27464 3' -64 NC_005869.1 + 26212 0.85 0.006826
Target:  5'- cCACCGCCGCCGCCACCaCCGCuCCAg- -3'
miRNA:   3'- -GUGGUGGCGGCGGUGGaGGCG-GGUgc -5'
27464 3' -64 NC_005869.1 + 17069 0.83 0.009671
Target:  5'- gGCCACCGCgGUCGCCUCCGUgCGCGc -3'
miRNA:   3'- gUGGUGGCGgCGGUGGAGGCGgGUGC- -5'
27464 3' -64 NC_005869.1 + 15630 0.83 0.01055
Target:  5'- gCGCCGCaGCCGCCGCCUCCGCaaaCGCa -3'
miRNA:   3'- -GUGGUGgCGGCGGUGGAGGCGg--GUGc -5'
27464 3' -64 NC_005869.1 + 18502 0.83 0.01086
Target:  5'- -uCCACCGCCGCCACCacaUCCG-CCACGg -3'
miRNA:   3'- guGGUGGCGGCGGUGG---AGGCgGGUGC- -5'
27464 3' -64 NC_005869.1 + 13311 0.82 0.012553
Target:  5'- gCGCCGCCGCCgGCCGCCgCCGCCgCGCc -3'
miRNA:   3'- -GUGGUGGCGG-CGGUGGaGGCGG-GUGc -5'
27464 3' -64 NC_005869.1 + 18456 0.81 0.014934
Target:  5'- gCGCCugCGCCGCCGCCgggugcUCCGCCUcCGg -3'
miRNA:   3'- -GUGGugGCGGCGGUGG------AGGCGGGuGC- -5'
27464 3' -64 NC_005869.1 + 26127 0.79 0.02303
Target:  5'- aCACCGCCGCC-CCGuCCaCCGCCCACc -3'
miRNA:   3'- -GUGGUGGCGGcGGU-GGaGGCGGGUGc -5'
27464 3' -64 NC_005869.1 + 16958 0.78 0.025841
Target:  5'- cCACCACCGCCGUgccgaGCCcCCGCgCCGCGu -3'
miRNA:   3'- -GUGGUGGCGGCGg----UGGaGGCG-GGUGC- -5'
27464 3' -64 NC_005869.1 + 15357 0.78 0.026595
Target:  5'- gAUCGCCGgCGCCACCcgCCGCCgGCGc -3'
miRNA:   3'- gUGGUGGCgGCGGUGGa-GGCGGgUGC- -5'
27464 3' -64 NC_005869.1 + 13669 0.77 0.030704
Target:  5'- gCGCCGCCGCagggagCGUCGCCUCCGCCguccUACGa -3'
miRNA:   3'- -GUGGUGGCG------GCGGUGGAGGCGG----GUGC- -5'
27464 3' -64 NC_005869.1 + 22319 0.76 0.034435
Target:  5'- cCGCCGCCGCCGCCccaGCUUCagaGCUCGCc -3'
miRNA:   3'- -GUGGUGGCGGCGG---UGGAGg--CGGGUGc -5'
27464 3' -64 NC_005869.1 + 16199 0.75 0.044531
Target:  5'- cCGCCGCCuGCCGCCGCUgcgCCGaggcgCCACGc -3'
miRNA:   3'- -GUGGUGG-CGGCGGUGGa--GGCg----GGUGC- -5'
27464 3' -64 NC_005869.1 + 28599 0.75 0.044531
Target:  5'- gCGCC-CCGCCGCUGCCaCCGCCC-Cu -3'
miRNA:   3'- -GUGGuGGCGGCGGUGGaGGCGGGuGc -5'
27464 3' -64 NC_005869.1 + 25516 0.75 0.047141
Target:  5'- gACCgGCCGCCGCCGCCga-GgCCGCGg -3'
miRNA:   3'- gUGG-UGGCGGCGGUGGaggCgGGUGC- -5'
27464 3' -64 NC_005869.1 + 25827 0.75 0.048501
Target:  5'- cCGCCGCC-CCGCCuccccuucccCCUCCGCCUGCu -3'
miRNA:   3'- -GUGGUGGcGGCGGu---------GGAGGCGGGUGc -5'
27464 3' -64 NC_005869.1 + 26431 0.74 0.049899
Target:  5'- gCGgCGCCGCCGCCugCgcgggCCGCCC-Cu -3'
miRNA:   3'- -GUgGUGGCGGCGGugGa----GGCGGGuGc -5'
27464 3' -64 NC_005869.1 + 17364 0.74 0.051336
Target:  5'- gGCgGCCGCCGCC-CgCUCCaGCgCCGCGg -3'
miRNA:   3'- gUGgUGGCGGCGGuG-GAGG-CG-GGUGC- -5'
27464 3' -64 NC_005869.1 + 13429 0.74 0.052665
Target:  5'- gGCCAgcuucucCCGCCGCCACCagCCGCgCCcCGg -3'
miRNA:   3'- gUGGU-------GGCGGCGGUGGa-GGCG-GGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.