miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27464 3' -64 NC_005869.1 + 22263 0.71 0.084974
Target:  5'- gCGCCGCCugcggacucuucuGCCuccucuuccucGCCGCCUuuGCCCGCu -3'
miRNA:   3'- -GUGGUGG-------------CGG-----------CGGUGGAggCGGGUGc -5'
27464 3' -64 NC_005869.1 + 25775 0.74 0.052814
Target:  5'- gCACCGCUGCCucGCCACCaacaCCGCCCuccucaACGa -3'
miRNA:   3'- -GUGGUGGCGG--CGGUGGa---GGCGGG------UGC- -5'
27464 3' -64 NC_005869.1 + 18559 0.74 0.057337
Target:  5'- cCGCCAagcgcCCGCCGCCGCCcaggagaucaucaUCCGCuCCgACGa -3'
miRNA:   3'- -GUGGU-----GGCGGCGGUGG-------------AGGCG-GG-UGC- -5'
27464 3' -64 NC_005869.1 + 25746 0.73 0.059149
Target:  5'- uGCUACUGCCGCUgcaACCUCUGCgCACc -3'
miRNA:   3'- gUGGUGGCGGCGG---UGGAGGCGgGUGc -5'
27464 3' -64 NC_005869.1 + 27929 0.72 0.070049
Target:  5'- aGCgACCGCCGCCACCcgauggagaCCGCaCCAUc -3'
miRNA:   3'- gUGgUGGCGGCGGUGGa--------GGCG-GGUGc -5'
27464 3' -64 NC_005869.1 + 23898 0.72 0.072044
Target:  5'- gGCCGCgCGCuUGCgGCCUCC-CCCGCGc -3'
miRNA:   3'- gUGGUG-GCG-GCGgUGGAGGcGGGUGC- -5'
27464 3' -64 NC_005869.1 + 22063 0.72 0.074095
Target:  5'- cCGCCACUggcugGCCGUCGCCUgggagcCCGCCuCGCGc -3'
miRNA:   3'- -GUGGUGG-----CGGCGGUGGA------GGCGG-GUGC- -5'
27464 3' -64 NC_005869.1 + 28330 0.72 0.078364
Target:  5'- cUACUACCGCCGCUacgugcugGCCaCCGCCCucauCGu -3'
miRNA:   3'- -GUGGUGGCGGCGG--------UGGaGGCGGGu---GC- -5'
27464 3' -64 NC_005869.1 + 24496 0.72 0.080586
Target:  5'- aCGCCGCCGCggCGCCaggagaacggaACCUgCGCCC-CGg -3'
miRNA:   3'- -GUGGUGGCG--GCGG-----------UGGAgGCGGGuGC- -5'
27464 3' -64 NC_005869.1 + 13429 0.74 0.052665
Target:  5'- gGCCAgcuucucCCGCCGCCACCagCCGCgCCcCGg -3'
miRNA:   3'- gUGGU-------GGCGGCGGUGGa-GGCG-GGuGC- -5'
27464 3' -64 NC_005869.1 + 28599 0.75 0.044531
Target:  5'- gCGCC-CCGCCGCUGCCaCCGCCC-Cu -3'
miRNA:   3'- -GUGGuGGCGGCGGUGGaGGCGGGuGc -5'
27464 3' -64 NC_005869.1 + 13669 0.77 0.030704
Target:  5'- gCGCCGCCGCagggagCGUCGCCUCCGCCguccUACGa -3'
miRNA:   3'- -GUGGUGGCG------GCGGUGGAGGCGG----GUGC- -5'
27464 3' -64 NC_005869.1 + 18744 0.87 0.005255
Target:  5'- cCGCUGCCGCCGCCGCCcCCGCCC-CGg -3'
miRNA:   3'- -GUGGUGGCGGCGGUGGaGGCGGGuGC- -5'
27464 3' -64 NC_005869.1 + 26212 0.85 0.006826
Target:  5'- cCACCGCCGCCGCCACCaCCGCuCCAg- -3'
miRNA:   3'- -GUGGUGGCGGCGGUGGaGGCG-GGUgc -5'
27464 3' -64 NC_005869.1 + 17069 0.83 0.009671
Target:  5'- gGCCACCGCgGUCGCCUCCGUgCGCGc -3'
miRNA:   3'- gUGGUGGCGgCGGUGGAGGCGgGUGC- -5'
27464 3' -64 NC_005869.1 + 15630 0.83 0.01055
Target:  5'- gCGCCGCaGCCGCCGCCUCCGCaaaCGCa -3'
miRNA:   3'- -GUGGUGgCGGCGGUGGAGGCGg--GUGc -5'
27464 3' -64 NC_005869.1 + 13311 0.82 0.012553
Target:  5'- gCGCCGCCGCCgGCCGCCgCCGCCgCGCc -3'
miRNA:   3'- -GUGGUGGCGG-CGGUGGaGGCGG-GUGc -5'
27464 3' -64 NC_005869.1 + 26127 0.79 0.02303
Target:  5'- aCACCGCCGCC-CCGuCCaCCGCCCACc -3'
miRNA:   3'- -GUGGUGGCGGcGGU-GGaGGCGGGUGc -5'
27464 3' -64 NC_005869.1 + 16958 0.78 0.025841
Target:  5'- cCACCACCGCCGUgccgaGCCcCCGCgCCGCGu -3'
miRNA:   3'- -GUGGUGGCGGCGg----UGGaGGCG-GGUGC- -5'
27464 3' -64 NC_005869.1 + 15357 0.78 0.026595
Target:  5'- gAUCGCCGgCGCCACCcgCCGCCgGCGc -3'
miRNA:   3'- gUGGUGGCgGCGGUGGa-GGCGGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.