miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27464 3' -64 NC_005869.1 + 306 0.67 0.197368
Target:  5'- gGCCAcauCCGCUGUggguauauCACCggcCCGCUCGCGg -3'
miRNA:   3'- gUGGU---GGCGGCG--------GUGGa--GGCGGGUGC- -5'
27464 3' -64 NC_005869.1 + 3867 0.67 0.187312
Target:  5'- aGCC-CaGCCGCCACCaCCaCCCACc -3'
miRNA:   3'- gUGGuGgCGGCGGUGGaGGcGGGUGc -5'
27464 3' -64 NC_005869.1 + 7263 0.68 0.164126
Target:  5'- uGCUGCCGCCGCUGCUgcggCCuUCCugGa -3'
miRNA:   3'- gUGGUGGCGGCGGUGGa---GGcGGGugC- -5'
27464 3' -64 NC_005869.1 + 8501 0.66 0.207892
Target:  5'- aGCCcCCGCgUGCCgGCCUCCGCggCCuCGg -3'
miRNA:   3'- gUGGuGGCG-GCGG-UGGAGGCG--GGuGC- -5'
27464 3' -64 NC_005869.1 + 9227 0.71 0.090089
Target:  5'- gGCCACCGCCuGCCgcACCUCCuCCUcuaaggaggGCGg -3'
miRNA:   3'- gUGGUGGCGG-CGG--UGGAGGcGGG---------UGC- -5'
27464 3' -64 NC_005869.1 + 9281 0.7 0.111758
Target:  5'- gGCCACCGCCGCCucuucuuccucuUCUCCcUCCAgGg -3'
miRNA:   3'- gUGGUGGCGGCGGu-----------GGAGGcGGGUgC- -5'
27464 3' -64 NC_005869.1 + 9342 0.66 0.213334
Target:  5'- -uCUGCUGCUGCUGCCUCCGCggggACGg -3'
miRNA:   3'- guGGUGGCGGCGGUGGAGGCGgg--UGC- -5'
27464 3' -64 NC_005869.1 + 9608 0.69 0.136004
Target:  5'- cCGCCACCGagggCGCCucggcgGCCUCCGCggCUGCGc -3'
miRNA:   3'- -GUGGUGGCg---GCGG------UGGAGGCG--GGUGC- -5'
27464 3' -64 NC_005869.1 + 10147 0.67 0.182455
Target:  5'- gGCCGCaagcgCGCgGCC-UCUCCGCCCGu- -3'
miRNA:   3'- gUGGUG-----GCGgCGGuGGAGGCGGGUgc -5'
27464 3' -64 NC_005869.1 + 10611 0.66 0.230396
Target:  5'- uGCgGCagaugaaGCCGCCgGCCggCGCCCugGg -3'
miRNA:   3'- gUGgUGg------CGGCGG-UGGagGCGGGugC- -5'
27464 3' -64 NC_005869.1 + 10670 0.67 0.177709
Target:  5'- uCGCCcUCGCCGUCGCUgacgCgGCCgCGCGa -3'
miRNA:   3'- -GUGGuGGCGGCGGUGGa---GgCGG-GUGC- -5'
27464 3' -64 NC_005869.1 + 12762 0.72 0.078364
Target:  5'- gGCCACCGUguaGCCcuCC-CCGUCCACGg -3'
miRNA:   3'- gUGGUGGCGg--CGGu-GGaGGCGGGUGC- -5'
27464 3' -64 NC_005869.1 + 13311 0.82 0.012553
Target:  5'- gCGCCGCCGCCgGCCGCCgCCGCCgCGCc -3'
miRNA:   3'- -GUGGUGGCGG-CGGUGGaGGCGG-GUGc -5'
27464 3' -64 NC_005869.1 + 13429 0.74 0.052665
Target:  5'- gGCCAgcuucucCCGCCGCCACCagCCGCgCCcCGg -3'
miRNA:   3'- gUGGU-------GGCGGCGGUGGa-GGCG-GGuGC- -5'
27464 3' -64 NC_005869.1 + 13669 0.77 0.030704
Target:  5'- gCGCCGCCGCagggagCGUCGCCUCCGCCguccUACGa -3'
miRNA:   3'- -GUGGUGGCG------GCGGUGGAGGCGG----GUGC- -5'
27464 3' -64 NC_005869.1 + 14782 0.67 0.192282
Target:  5'- aGCUACUGCCGCUGCgCUCCcggGCCUucuACa -3'
miRNA:   3'- gUGGUGGCGGCGGUG-GAGG---CGGG---UGc -5'
27464 3' -64 NC_005869.1 + 15145 0.66 0.224584
Target:  5'- aGCC-CCGCCaugGCCAuCCUCgucuCGCCCAg- -3'
miRNA:   3'- gUGGuGGCGG---CGGU-GGAG----GCGGGUgc -5'
27464 3' -64 NC_005869.1 + 15248 0.67 0.173074
Target:  5'- gGCCGgaGCCGCgGCCggaCGCCgACGc -3'
miRNA:   3'- gUGGUggCGGCGgUGGag-GCGGgUGC- -5'
27464 3' -64 NC_005869.1 + 15357 0.78 0.026595
Target:  5'- gAUCGCCGgCGCCACCcgCCGCCgGCGc -3'
miRNA:   3'- gUGGUGGCgGCGGUGGa-GGCGGgUGC- -5'
27464 3' -64 NC_005869.1 + 15630 0.83 0.01055
Target:  5'- gCGCCGCaGCCGCCGCCUCCGCaaaCGCa -3'
miRNA:   3'- -GUGGUGgCGGCGGUGGAGGCGg--GUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.