miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27464 5' -58.6 NC_005869.1 + 24131 1.08 0.000199
Target:  5'- cUUCACUGCAGCAGCGGCAGCAGGAGCc -3'
miRNA:   3'- -AAGUGACGUCGUCGCCGUCGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 11724 0.86 0.010366
Target:  5'- --aGCUGgGGCGGCGGCGGCGGGGGUg -3'
miRNA:   3'- aagUGACgUCGUCGCCGUCGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 3656 0.84 0.014132
Target:  5'- --aGCUGCGGCAGCaGCuGCAGGAGCu -3'
miRNA:   3'- aagUGACGUCGUCGcCGuCGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 26780 0.79 0.03672
Target:  5'- -cCGCaGCAGCGGCGGCAGCAGaaccAGCc -3'
miRNA:   3'- aaGUGaCGUCGUCGCCGUCGUCc---UCG- -5'
27464 5' -58.6 NC_005869.1 + 27725 0.79 0.037515
Target:  5'- aUgACUGacgguccccaggguCAGCAGCGGCuGCGGGAGCu -3'
miRNA:   3'- aAgUGAC--------------GUCGUCGCCGuCGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 15296 0.77 0.049814
Target:  5'- --gGCggggGCGGCGGCGGCAGCggAGGAGg -3'
miRNA:   3'- aagUGa---CGUCGUCGCCGUCG--UCCUCg -5'
27464 5' -58.6 NC_005869.1 + 27577 0.77 0.054562
Target:  5'- cUUCcCcGCAGCGGCGGCaucGGCAGcGAGCa -3'
miRNA:   3'- -AAGuGaCGUCGUCGCCG---UCGUC-CUCG- -5'
27464 5' -58.6 NC_005869.1 + 7423 0.77 0.05624
Target:  5'- gUCGugGCGGUAGCGGCGcCAGGAGCg -3'
miRNA:   3'- aAGUgaCGUCGUCGCCGUcGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 26996 0.76 0.058144
Target:  5'- -gUACUGCgcucGGCAGCGGCAGacccgccgguauuuaAGGAGCg -3'
miRNA:   3'- aaGUGACG----UCGUCGCCGUCg--------------UCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 17834 0.76 0.059748
Target:  5'- -gCGCcucgGC-GCAGCGGCGGCAGGcGGCg -3'
miRNA:   3'- aaGUGa---CGuCGUCGCCGUCGUCC-UCG- -5'
27464 5' -58.6 NC_005869.1 + 18381 0.75 0.07377
Target:  5'- --aGCaGCAGCuGCGGCAGCAGcAGCu -3'
miRNA:   3'- aagUGaCGUCGuCGCCGUCGUCcUCG- -5'
27464 5' -58.6 NC_005869.1 + 20724 0.75 0.07377
Target:  5'- -gCGCgGCGGCGGCGGcCGGCGGcGGCg -3'
miRNA:   3'- aaGUGaCGUCGUCGCC-GUCGUCcUCG- -5'
27464 5' -58.6 NC_005869.1 + 14186 0.75 0.07377
Target:  5'- -cUACcugGCGGUggGGCGGCAGCAGGGGg -3'
miRNA:   3'- aaGUGa--CGUCG--UCGCCGUCGUCCUCg -5'
27464 5' -58.6 NC_005869.1 + 1853 0.74 0.083149
Target:  5'- -gCAUgaUGgAGCAGCGGCAGgAGGAGg -3'
miRNA:   3'- aaGUG--ACgUCGUCGCCGUCgUCCUCg -5'
27464 5' -58.6 NC_005869.1 + 23695 0.74 0.087993
Target:  5'- --aGCUGCAGCAGCGGCcgggccaccgccgGGCucGGGGUc -3'
miRNA:   3'- aagUGACGUCGUCGCCG-------------UCGu-CCUCG- -5'
27464 5' -58.6 NC_005869.1 + 1930 0.74 0.088255
Target:  5'- gUCAUc-CGGCAGUGGCAGCGGG-GCc -3'
miRNA:   3'- aAGUGacGUCGUCGCCGUCGUCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 24521 0.74 0.093658
Target:  5'- cUCAgcCUGCcccucuGCAGCGGCAccgcgcugcGCGGGGGCg -3'
miRNA:   3'- aAGU--GACGu-----CGUCGCCGU---------CGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 1932 0.73 0.102355
Target:  5'- --aGCUGguGgcgCAGCGGCAGCAGuAGCa -3'
miRNA:   3'- aagUGACguC---GUCGCCGUCGUCcUCG- -5'
27464 5' -58.6 NC_005869.1 + 8520 0.72 0.122072
Target:  5'- -cCGCggccucgGCGGCGGCGGCcggucucaGGCGGGcAGCu -3'
miRNA:   3'- aaGUGa------CGUCGUCGCCG--------UCGUCC-UCG- -5'
27464 5' -58.6 NC_005869.1 + 13362 0.72 0.129395
Target:  5'- --aACuUGCAGUAGCGGCcguuGCccAGGAGCu -3'
miRNA:   3'- aagUG-ACGUCGUCGCCGu---CG--UCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.