miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27464 5' -58.6 NC_005869.1 + 1625 0.67 0.26777
Target:  5'- --aGCUgGCAGCGGUGaaGguGCGGGAGg -3'
miRNA:   3'- aagUGA-CGUCGUCGC--CguCGUCCUCg -5'
27464 5' -58.6 NC_005869.1 + 1853 0.74 0.083149
Target:  5'- -gCAUgaUGgAGCAGCGGCAGgAGGAGg -3'
miRNA:   3'- aaGUG--ACgUCGUCGCCGUCgUCCUCg -5'
27464 5' -58.6 NC_005869.1 + 1856 0.67 0.302911
Target:  5'- -gCGgaGCAGguGCGGCAGgggcugugcaucauCAGGAuGCc -3'
miRNA:   3'- aaGUgaCGUCguCGCCGUC--------------GUCCU-CG- -5'
27464 5' -58.6 NC_005869.1 + 1930 0.74 0.088255
Target:  5'- gUCAUc-CGGCAGUGGCAGCGGG-GCc -3'
miRNA:   3'- aAGUGacGUCGUCGCCGUCGUCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 1932 0.73 0.102355
Target:  5'- --aGCUGguGgcgCAGCGGCAGCAGuAGCa -3'
miRNA:   3'- aagUGACguC---GUCGCCGUCGUCcUCG- -5'
27464 5' -58.6 NC_005869.1 + 2630 0.66 0.321361
Target:  5'- aUCGggGC-GCAGCGGCGG-GGGAGg -3'
miRNA:   3'- aAGUgaCGuCGUCGCCGUCgUCCUCg -5'
27464 5' -58.6 NC_005869.1 + 3052 0.7 0.172426
Target:  5'- --uGCUGCAcaAGCGGCGGgAGGAGa -3'
miRNA:   3'- aagUGACGUcgUCGCCGUCgUCCUCg -5'
27464 5' -58.6 NC_005869.1 + 3656 0.84 0.014132
Target:  5'- --aGCUGCGGCAGCaGCuGCAGGAGCu -3'
miRNA:   3'- aagUGACGUCGUCGcCGuCGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 4498 0.68 0.260732
Target:  5'- -cCGgUGCAGCGGgGGaAGCGGGcguGCa -3'
miRNA:   3'- aaGUgACGUCGUCgCCgUCGUCCu--CG- -5'
27464 5' -58.6 NC_005869.1 + 5428 0.69 0.204024
Target:  5'- -cCACauagGUgaggGGCGGUGGCAGCGgcGGGGCg -3'
miRNA:   3'- aaGUGa---CG----UCGUCGCCGUCGU--CCUCG- -5'
27464 5' -58.6 NC_005869.1 + 5584 0.69 0.215624
Target:  5'- gUCGCUGCGGCAGCGcucGCAcuGGGucucGCa -3'
miRNA:   3'- aAGUGACGUCGUCGC---CGUcgUCCu---CG- -5'
27464 5' -58.6 NC_005869.1 + 5713 0.67 0.282306
Target:  5'- -gCAC-GUAGCGGCGGUAGUagAGGAu- -3'
miRNA:   3'- aaGUGaCGUCGUCGCCGUCG--UCCUcg -5'
27464 5' -58.6 NC_005869.1 + 6111 0.67 0.280086
Target:  5'- -cCAUcGCGGUGGCGGCGGUcgcuguagcgcgugGGGAGg -3'
miRNA:   3'- aaGUGaCGUCGUCGCCGUCG--------------UCCUCg -5'
27464 5' -58.6 NC_005869.1 + 6256 0.67 0.29746
Target:  5'- --aGCaGCAGCgguuagggcacuGGCGGCGGUgcuggucgAGGAGCu -3'
miRNA:   3'- aagUGaCGUCG------------UCGCCGUCG--------UCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 6520 0.68 0.253845
Target:  5'- gUC-CaGCAGaGGCGGCcgcccuuGCGGGAGCa -3'
miRNA:   3'- aAGuGaCGUCgUCGCCGu------CGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 6666 0.71 0.14527
Target:  5'- gUC-CUGcCAGCGGCgGGCGGcCAGGGcGCg -3'
miRNA:   3'- aAGuGAC-GUCGUCG-CCGUC-GUCCU-CG- -5'
27464 5' -58.6 NC_005869.1 + 6723 0.66 0.338078
Target:  5'- -aCGCgGCAGguGCaGGUGGguGG-GCg -3'
miRNA:   3'- aaGUGaCGUCguCG-CCGUCguCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 7423 0.77 0.05624
Target:  5'- gUCGugGCGGUAGCGGCGcCAGGAGCg -3'
miRNA:   3'- aAGUgaCGUCGUCGCCGUcGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 7611 0.69 0.204024
Target:  5'- -cCGCgcagGCGGCGGCGccGCAGCuGG-GCa -3'
miRNA:   3'- aaGUGa---CGUCGUCGC--CGUCGuCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 7822 0.72 0.137122
Target:  5'- --aGCUGgAGCGGUGGUGGCGGcGGCg -3'
miRNA:   3'- aagUGACgUCGUCGCCGUCGUCcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.