miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27465 3' -57.1 NC_005869.1 + 24967 1.13 0.00018
Target:  5'- aCCUCCUGGUGGUCAGCGACGAGCAGCu -3'
miRNA:   3'- -GGAGGACCACCAGUCGCUGCUCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 2992 0.78 0.075947
Target:  5'- gCUCCUGGUGGU--G-GACGAGCAGUc -3'
miRNA:   3'- gGAGGACCACCAguCgCUGCUCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 22350 0.78 0.085341
Target:  5'- --aCCUGGUGGagGGCGuggacaACGAGCGGCu -3'
miRNA:   3'- ggaGGACCACCagUCGC------UGCUCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 15474 0.75 0.138945
Target:  5'- aUCUCCUGGg---CGGCGGCGGGCgcuuGGCg -3'
miRNA:   3'- -GGAGGACCaccaGUCGCUGCUCG----UCG- -5'
27465 3' -57.1 NC_005869.1 + 6654 0.73 0.193851
Target:  5'- gCCgUCgaGGcGGUCcugccAGCGGCGGGCGGCc -3'
miRNA:   3'- -GG-AGgaCCaCCAG-----UCGCUGCUCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 7890 0.72 0.216012
Target:  5'- uCCUCCggaggggcggcaUGGUGGgCGGUGGacgGGGCGGCg -3'
miRNA:   3'- -GGAGG------------ACCACCaGUCGCUg--CUCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 9825 0.72 0.216012
Target:  5'- gCCUCCUGcUGG-CAGCGGCcgauguccuuGAGCuGCu -3'
miRNA:   3'- -GGAGGACcACCaGUCGCUG----------CUCGuCG- -5'
27465 3' -57.1 NC_005869.1 + 8156 0.72 0.218344
Target:  5'- gCCUCCUggaugcucuugaugaGGUGG-CAGCGGCccugggugaaGAGCAGg -3'
miRNA:   3'- -GGAGGA---------------CCACCaGUCGCUG----------CUCGUCg -5'
27465 3' -57.1 NC_005869.1 + 1933 0.72 0.221882
Target:  5'- ---gCUGGUGGcgCAGCGGC-AGCAGUa -3'
miRNA:   3'- ggagGACCACCa-GUCGCUGcUCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 18656 0.71 0.227887
Target:  5'- cCCUCCgacgucgacgaUGGcGGcgcCGGCGGCGGGUGGCg -3'
miRNA:   3'- -GGAGG-----------ACCaCCa--GUCGCUGCUCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 2345 0.71 0.253291
Target:  5'- aUCUUCUGGUGGuUCAGgGA--GGCGGUg -3'
miRNA:   3'- -GGAGGACCACC-AGUCgCUgcUCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 15327 0.7 0.266844
Target:  5'- ----gUGGUGGUgagCGGCGGCGGGgGGCg -3'
miRNA:   3'- ggaggACCACCA---GUCGCUGCUCgUCG- -5'
27465 3' -57.1 NC_005869.1 + 26127 0.7 0.2957
Target:  5'- cCUUCCUGcUGGUCuuccaccucucgGGgGACGAGgAGCu -3'
miRNA:   3'- -GGAGGACcACCAG------------UCgCUGCUCgUCG- -5'
27465 3' -57.1 NC_005869.1 + 21371 0.7 0.303283
Target:  5'- uCCUCCUcGGcGGUCAGgGcauACGccgccGGCAGCc -3'
miRNA:   3'- -GGAGGA-CCaCCAGUCgC---UGC-----UCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 6577 0.69 0.314149
Target:  5'- uCCUCgUcGGgggGGUCGGCGucgauggugaagaggGCGGGCAGg -3'
miRNA:   3'- -GGAGgA-CCa--CCAGUCGC---------------UGCUCGUCg -5'
27465 3' -57.1 NC_005869.1 + 205 0.69 0.318895
Target:  5'- uCCUCCgcGG-GG-CGGgGcCGAGCGGCg -3'
miRNA:   3'- -GGAGGa-CCaCCaGUCgCuGCUCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 20700 0.69 0.334279
Target:  5'- uCCUCCUccagggaggagcgGGaGGcgCGGCGGCG-GCGGCc -3'
miRNA:   3'- -GGAGGA-------------CCaCCa-GUCGCUGCuCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 17338 0.69 0.335103
Target:  5'- uCCUCCguguccGGUGG-CAGgGGCacGGCGGCc -3'
miRNA:   3'- -GGAGGa-----CCACCaGUCgCUGc-UCGUCG- -5'
27465 3' -57.1 NC_005869.1 + 9544 0.69 0.34343
Target:  5'- uUCUCCUGGcGccgCGGCGGCGuGGCGGg -3'
miRNA:   3'- -GGAGGACCaCca-GUCGCUGC-UCGUCg -5'
27465 3' -57.1 NC_005869.1 + 26767 0.69 0.351905
Target:  5'- aUCUCCaGGaaGGccgcagCAGCGGCG-GCAGCa -3'
miRNA:   3'- -GGAGGaCCa-CCa-----GUCGCUGCuCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.