Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27465 | 3' | -57.1 | NC_005869.1 | + | 24967 | 1.13 | 0.00018 |
Target: 5'- aCCUCCUGGUGGUCAGCGACGAGCAGCu -3' miRNA: 3'- -GGAGGACCACCAGUCGCUGCUCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 12631 | 0.66 | 0.506172 |
Target: 5'- uCUUCCUGaccaaccGG-CAGCGGCGgcugccGGCGGCg -3' miRNA: 3'- -GGAGGACca-----CCaGUCGCUGC------UCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 18779 | 0.67 | 0.405803 |
Target: 5'- gCUCCU-GUGcGUCGGCGucCGGccGCGGCu -3' miRNA: 3'- gGAGGAcCAC-CAGUCGCu-GCU--CGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 17812 | 0.68 | 0.400183 |
Target: 5'- aCUCCgcGGUGGguuccgcguggcgccUCGGCGcaGCG-GCGGCa -3' miRNA: 3'- gGAGGa-CCACC---------------AGUCGC--UGCuCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 8516 | 0.68 | 0.387266 |
Target: 5'- gCCUCCgc--GGccUCGGCGGCG-GCGGCc -3' miRNA: 3'- -GGAGGaccaCC--AGUCGCUGCuCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 18228 | 0.68 | 0.37821 |
Target: 5'- --gCCUGGaacagcgGGaCGGUGACGAGCGuGCg -3' miRNA: 3'- ggaGGACCa------CCaGUCGCUGCUCGU-CG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 26767 | 0.69 | 0.351905 |
Target: 5'- aUCUCCaGGaaGGccgcagCAGCGGCG-GCAGCa -3' miRNA: 3'- -GGAGGaCCa-CCa-----GUCGCUGCuCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 205 | 0.69 | 0.318895 |
Target: 5'- uCCUCCgcGG-GG-CGGgGcCGAGCGGCg -3' miRNA: 3'- -GGAGGa-CCaCCaGUCgCuGCUCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 6577 | 0.69 | 0.314149 |
Target: 5'- uCCUCgUcGGgggGGUCGGCGucgauggugaagaggGCGGGCAGg -3' miRNA: 3'- -GGAGgA-CCa--CCAGUCGC---------------UGCUCGUCg -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 8156 | 0.72 | 0.218344 |
Target: 5'- gCCUCCUggaugcucuugaugaGGUGG-CAGCGGCccugggugaaGAGCAGg -3' miRNA: 3'- -GGAGGA---------------CCACCaGUCGCUG----------CUCGUCg -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 9825 | 0.72 | 0.216012 |
Target: 5'- gCCUCCUGcUGG-CAGCGGCcgauguccuuGAGCuGCu -3' miRNA: 3'- -GGAGGACcACCaGUCGCUG----------CUCGuCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 6654 | 0.73 | 0.193851 |
Target: 5'- gCCgUCgaGGcGGUCcugccAGCGGCGGGCGGCc -3' miRNA: 3'- -GG-AGgaCCaCCAG-----UCGCUGCUCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 22350 | 0.78 | 0.085341 |
Target: 5'- --aCCUGGUGGagGGCGuggacaACGAGCGGCu -3' miRNA: 3'- ggaGGACCACCagUCGC------UGCUCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 2992 | 0.78 | 0.075947 |
Target: 5'- gCUCCUGGUGGU--G-GACGAGCAGUc -3' miRNA: 3'- gGAGGACCACCAguCgCUGCUCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 31431 | 0.66 | 0.474835 |
Target: 5'- gCC-CCcGGUGGUcCAGCGcCuuGUAGCa -3' miRNA: 3'- -GGaGGaCCACCA-GUCGCuGcuCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 2999 | 0.66 | 0.486216 |
Target: 5'- uCUUCCUGGcuuuguguccaucacGGauccUCAGCu-CGAGCAGCg -3' miRNA: 3'- -GGAGGACCa--------------CC----AGUCGcuGCUCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 30163 | 0.66 | 0.506172 |
Target: 5'- cUCUCCggggugGGUGGUggUGGCGGCuGGGCuuccacuccAGCa -3' miRNA: 3'- -GGAGGa-----CCACCA--GUCGCUG-CUCG---------UCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 6107 | 0.66 | 0.516815 |
Target: 5'- gUCUCCaucgcGGUGG-CGGCGGuCGcuGUAGCg -3' miRNA: 3'- -GGAGGa----CCACCaGUCGCU-GCu-CGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 7832 | 0.66 | 0.516815 |
Target: 5'- ----gUGGUGG-CGGCGGCG-GUGGCu -3' miRNA: 3'- ggaggACCACCaGUCGCUGCuCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 15474 | 0.75 | 0.138945 |
Target: 5'- aUCUCCUGGg---CGGCGGCGGGCgcuuGGCg -3' miRNA: 3'- -GGAGGACCaccaGUCGCUGCUCG----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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