miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27466 3' -53.5 NC_005869.1 + 25075 1.14 0.000316
Target:  5'- uGCAGCUCCACUGCAUGCACACCUUCCu -3'
miRNA:   3'- -CGUCGAGGUGACGUACGUGUGGAAGG- -5'
27466 3' -53.5 NC_005869.1 + 24988 0.83 0.053381
Target:  5'- aGCAGCUggcCCGCUGgAUGCACACCUcggaccccaaggUCCu -3'
miRNA:   3'- -CGUCGA---GGUGACgUACGUGUGGA------------AGG- -5'
27466 3' -53.5 NC_005869.1 + 12268 0.77 0.140099
Target:  5'- aGguGUUCCGCUcGgGgccGCACACCUUCCu -3'
miRNA:   3'- -CguCGAGGUGA-CgUa--CGUGUGGAAGG- -5'
27466 3' -53.5 NC_005869.1 + 30379 0.74 0.233464
Target:  5'- cGCAGCUCCugcaGCUGC-UGCcgcagcuccgccaGCGCCUgCCg -3'
miRNA:   3'- -CGUCGAGG----UGACGuACG-------------UGUGGAaGG- -5'
27466 3' -53.5 NC_005869.1 + 18775 0.74 0.240646
Target:  5'- cGCGGCUCCugUGCGUcgGCGuCCggCCg -3'
miRNA:   3'- -CGUCGAGGugACGUAcgUGU-GGaaGG- -5'
27466 3' -53.5 NC_005869.1 + 7263 0.72 0.306457
Target:  5'- uGCuGCcgCCGCUGC-UGCG-GCCUUCCu -3'
miRNA:   3'- -CGuCGa-GGUGACGuACGUgUGGAAGG- -5'
27466 3' -53.5 NC_005869.1 + 21268 0.71 0.339854
Target:  5'- -gGGCUCCAggUUGCG-GCugGCCUcgUCCa -3'
miRNA:   3'- cgUCGAGGU--GACGUaCGugUGGA--AGG- -5'
27466 3' -53.5 NC_005869.1 + 6662 0.71 0.357516
Target:  5'- -gGGCUCCGCccccggcuaauUGCAUGCcgGCgucagucagucuGCCUUCCa -3'
miRNA:   3'- cgUCGAGGUG-----------ACGUACG--UG------------UGGAAGG- -5'
27466 3' -53.5 NC_005869.1 + 14786 0.71 0.375812
Target:  5'- cGCAGCUgcagCCGCUGCGaGCGCuCCgUCg -3'
miRNA:   3'- -CGUCGA----GGUGACGUaCGUGuGGaAGg -5'
27466 3' -53.5 NC_005869.1 + 9997 0.71 0.385194
Target:  5'- cCAGCUCacugGCUGCgcuGUGCugGUCUUCCa -3'
miRNA:   3'- cGUCGAGg---UGACG---UACGugUGGAAGG- -5'
27466 3' -53.5 NC_005869.1 + 18473 0.7 0.39473
Target:  5'- gGguGCUCCGCcuCcgGCGCGCCaccgcUUCCa -3'
miRNA:   3'- -CguCGAGGUGacGuaCGUGUGG-----AAGG- -5'
27466 3' -53.5 NC_005869.1 + 9691 0.69 0.444621
Target:  5'- cGCAGCagguggCGCUGCA-GCACGuCCgcgUCCa -3'
miRNA:   3'- -CGUCGag----GUGACGUaCGUGU-GGa--AGG- -5'
27466 3' -53.5 NC_005869.1 + 13665 0.69 0.455018
Target:  5'- aGCAGCgCCGCcGCAgggaGCGuCGCCU-CCg -3'
miRNA:   3'- -CGUCGaGGUGaCGUa---CGU-GUGGAaGG- -5'
27466 3' -53.5 NC_005869.1 + 24536 0.69 0.455018
Target:  5'- uGCAGCggcaCCgcGCUGCGcggGgGCGCCUUCg -3'
miRNA:   3'- -CGUCGa---GG--UGACGUa--CgUGUGGAAGg -5'
27466 3' -53.5 NC_005869.1 + 24254 0.69 0.465545
Target:  5'- --cGCaUCCGcCUGCA-GCGCGCCggCCg -3'
miRNA:   3'- cguCG-AGGU-GACGUaCGUGUGGaaGG- -5'
27466 3' -53.5 NC_005869.1 + 25526 0.69 0.476197
Target:  5'- --uGCcagCCAgaGCAugaUGCAUGCCUUCCg -3'
miRNA:   3'- cguCGa--GGUgaCGU---ACGUGUGGAAGG- -5'
27466 3' -53.5 NC_005869.1 + 25743 0.69 0.486969
Target:  5'- -gAGUgcuacugCCGCUGCAaccucUGCGCACCgcaCCg -3'
miRNA:   3'- cgUCGa------GGUGACGU-----ACGUGUGGaa-GG- -5'
27466 3' -53.5 NC_005869.1 + 10920 0.68 0.497855
Target:  5'- -gGGCUCCAaggcGCA-GCAgGCCUUCg -3'
miRNA:   3'- cgUCGAGGUga--CGUaCGUgUGGAAGg -5'
27466 3' -53.5 NC_005869.1 + 20371 0.68 0.507744
Target:  5'- gGCGacGCUCC-CUGCGgcgGCGCugCUggcaucaUCCu -3'
miRNA:   3'- -CGU--CGAGGuGACGUa--CGUGugGA-------AGG- -5'
27466 3' -53.5 NC_005869.1 + 29291 0.68 0.507744
Target:  5'- aCAGCUCCcCUGCAguuccaggGCAacgcccuCACuCUUCCc -3'
miRNA:   3'- cGUCGAGGuGACGUa-------CGU-------GUG-GAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.