Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27466 | 3' | -53.5 | NC_005869.1 | + | 25075 | 1.14 | 0.000316 |
Target: 5'- uGCAGCUCCACUGCAUGCACACCUUCCu -3' miRNA: 3'- -CGUCGAGGUGACGUACGUGUGGAAGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 9212 | 0.66 | 0.623001 |
Target: 5'- gGCGGCgauggccucggCCACcGCcUGcCGCACCUccUCCu -3' miRNA: 3'- -CGUCGa----------GGUGaCGuAC-GUGUGGA--AGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 12602 | 0.66 | 0.623001 |
Target: 5'- cGCGGCgCgGCUGCAgGC-CACCcucaacuucUUCCu -3' miRNA: 3'- -CGUCGaGgUGACGUaCGuGUGG---------AAGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 10329 | 0.67 | 0.565179 |
Target: 5'- cGCGGgUCCACUG-GUGgGCGCggUUCCa -3' miRNA: 3'- -CGUCgAGGUGACgUACgUGUGg-AAGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 15994 | 0.68 | 0.553757 |
Target: 5'- -aGGCgCCGCUggacggggcggcGCGUGCGCGCCcaCCu -3' miRNA: 3'- cgUCGaGGUGA------------CGUACGUGUGGaaGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 15634 | 0.68 | 0.542405 |
Target: 5'- cGCAGCcgCCGCcuccGCAaaCGCACCUcgUCCu -3' miRNA: 3'- -CGUCGa-GGUGa---CGUacGUGUGGA--AGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 24353 | 0.68 | 0.531131 |
Target: 5'- uGCAGCgCCAcCUGC-UGCGCcagaguACCaUCCu -3' miRNA: 3'- -CGUCGaGGU-GACGuACGUG------UGGaAGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 9507 | 0.68 | 0.531131 |
Target: 5'- cGCAGCgcggugCCGCUGCAgagggGCAgGCUgagCg -3' miRNA: 3'- -CGUCGa-----GGUGACGUa----CGUgUGGaa-Gg -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 29291 | 0.68 | 0.507744 |
Target: 5'- aCAGCUCCcCUGCAguuccaggGCAacgcccuCACuCUUCCc -3' miRNA: 3'- cGUCGAGGuGACGUa-------CGU-------GUG-GAAGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 24988 | 0.83 | 0.053381 |
Target: 5'- aGCAGCUggcCCGCUGgAUGCACACCUcggaccccaaggUCCu -3' miRNA: 3'- -CGUCGA---GGUGACgUACGUGUGGA------------AGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 12268 | 0.77 | 0.140099 |
Target: 5'- aGguGUUCCGCUcGgGgccGCACACCUUCCu -3' miRNA: 3'- -CguCGAGGUGA-CgUa--CGUGUGGAAGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 18775 | 0.74 | 0.240646 |
Target: 5'- cGCGGCUCCugUGCGUcgGCGuCCggCCg -3' miRNA: 3'- -CGUCGAGGugACGUAcgUGU-GGaaGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 13665 | 0.69 | 0.455018 |
Target: 5'- aGCAGCgCCGCcGCAgggaGCGuCGCCU-CCg -3' miRNA: 3'- -CGUCGaGGUGaCGUa---CGU-GUGGAaGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 25526 | 0.69 | 0.476197 |
Target: 5'- --uGCcagCCAgaGCAugaUGCAUGCCUUCCg -3' miRNA: 3'- cguCGa--GGUgaCGU---ACGUGUGGAAGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 25743 | 0.69 | 0.486969 |
Target: 5'- -gAGUgcuacugCCGCUGCAaccucUGCGCACCgcaCCg -3' miRNA: 3'- cgUCGa------GGUGACGU-----ACGUGUGGaa-GG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 30379 | 0.74 | 0.233464 |
Target: 5'- cGCAGCUCCugcaGCUGC-UGCcgcagcuccgccaGCGCCUgCCg -3' miRNA: 3'- -CGUCGAGG----UGACGuACG-------------UGUGGAaGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 18416 | 0.66 | 0.623001 |
Target: 5'- gGCGGCg--GCUGCG-GCGCACCc-CCa -3' miRNA: 3'- -CGUCGaggUGACGUaCGUGUGGaaGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 10666 | 0.67 | 0.576662 |
Target: 5'- aGCGGCUCggaggggcugCACUGCcUGCACggGCUgcCCa -3' miRNA: 3'- -CGUCGAG----------GUGACGuACGUG--UGGaaGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 15669 | 0.67 | 0.565179 |
Target: 5'- cGCAGCUgCUGCUGU-UGCACcgGCggUCCa -3' miRNA: 3'- -CGUCGA-GGUGACGuACGUG--UGgaAGG- -5' |
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27466 | 3' | -53.5 | NC_005869.1 | + | 26430 | 0.68 | 0.542405 |
Target: 5'- uGCGGCgCCGCcGCcUGCGCGggccgccccUCUUCCu -3' miRNA: 3'- -CGUCGaGGUGaCGuACGUGU---------GGAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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