miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27469 5' -63.2 NC_005869.1 + 17479 0.74 0.060677
Target:  5'- aGCCCCUCcAGCCCcGCGcGCGCCgCgUGCg -3'
miRNA:   3'- -CGGGGGGuUCGGGcUGC-CGUGG-G-ACG- -5'
27469 5' -63.2 NC_005869.1 + 17585 0.7 0.11563
Target:  5'- gGUCCCCC--GCCCu-CGGCugCCgagGCg -3'
miRNA:   3'- -CGGGGGGuuCGGGcuGCCGugGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 17865 0.67 0.208294
Target:  5'- aCCgCCgGGGgCCGAugaggggUGGCAUCCUGCc -3'
miRNA:   3'- cGGgGGgUUCgGGCU-------GCCGUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 18045 0.71 0.10643
Target:  5'- cGCCgCCCC--GUCCaGCGGCGCCUgggGCg -3'
miRNA:   3'- -CGG-GGGGuuCGGGcUGCCGUGGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 18308 0.75 0.049701
Target:  5'- uGCCUCCgGGGUCC-ACGGUGCCCUGg -3'
miRNA:   3'- -CGGGGGgUUCGGGcUGCCGUGGGACg -5'
27469 5' -63.2 NC_005869.1 + 18430 0.7 0.112484
Target:  5'- cGCaCCCCCAggauGGCCgGcGCGGaGCgCCUGCg -3'
miRNA:   3'- -CG-GGGGGU----UCGGgC-UGCCgUG-GGACG- -5'
27469 5' -63.2 NC_005869.1 + 18530 0.66 0.243702
Target:  5'- gGUCCCCCGuGGUCUGcaugcgcgaagaACGGCGCCgCgcgcgGCg -3'
miRNA:   3'- -CGGGGGGU-UCGGGC------------UGCCGUGG-Ga----CG- -5'
27469 5' -63.2 NC_005869.1 + 18654 0.69 0.143903
Target:  5'- gGCCCUCCGAcGUCgacgaUGGCGGCGCCg-GCg -3'
miRNA:   3'- -CGGGGGGUU-CGG-----GCUGCCGUGGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 18757 0.7 0.129053
Target:  5'- cGCCCCCgCcccGGCCCccGCGGC-UCCUGUg -3'
miRNA:   3'- -CGGGGG-Gu--UCGGGc-UGCCGuGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 20284 0.67 0.188055
Target:  5'- cGCCCCUCGguggGGCCCa--GGUACCgCgGCg -3'
miRNA:   3'- -CGGGGGGU----UCGGGcugCCGUGG-GaCG- -5'
27469 5' -63.2 NC_005869.1 + 21208 0.66 0.237572
Target:  5'- uCCUCCguGGCCUGGCcgGGCAaugaccgCCUGCu -3'
miRNA:   3'- cGGGGGguUCGGGCUG--CCGUg------GGACG- -5'
27469 5' -63.2 NC_005869.1 + 21777 0.66 0.231571
Target:  5'- --gCCCCGAGCggaacaccuCCGucuGCGGCACCUcGCu -3'
miRNA:   3'- cggGGGGUUCG---------GGC---UGCCGUGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 22515 0.65 0.254424
Target:  5'- cUCCUCCAGGuccuccucgcccucCCCGGCcaGCGCCCgGCg -3'
miRNA:   3'- cGGGGGGUUC--------------GGGCUGc-CGUGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 23380 0.69 0.137784
Target:  5'- aGCCCCuCCGAGCCgCuGCGGUgcugccagaucacgcACCC-GCa -3'
miRNA:   3'- -CGGGG-GGUUCGG-GcUGCCG---------------UGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 23405 0.69 0.150676
Target:  5'- cGCCCCCUccGCgcccagggcgccggCCGGCGGCuucaUCUGCc -3'
miRNA:   3'- -CGGGGGGuuCG--------------GGCUGCCGug--GGACG- -5'
27469 5' -63.2 NC_005869.1 + 23860 0.73 0.07398
Target:  5'- cGCCCCaCCu-GCUCGugGGCuaccaGCaCCUGCu -3'
miRNA:   3'- -CGGGG-GGuuCGGGCugCCG-----UG-GGACG- -5'
27469 5' -63.2 NC_005869.1 + 24408 0.68 0.160299
Target:  5'- cGCCCCCgGcgcAGCCgCGGaggccgccgaGGCGCCCUcggugGCg -3'
miRNA:   3'- -CGGGGGgU---UCGG-GCUg---------CCGUGGGA-----CG- -5'
27469 5' -63.2 NC_005869.1 + 24488 0.67 0.213779
Target:  5'- cCCCCgCCAcGCCgCcGCGGCGCCaggagaacggaacCUGCg -3'
miRNA:   3'- cGGGG-GGUuCGG-GcUGCCGUGG-------------GACG- -5'
27469 5' -63.2 NC_005869.1 + 24528 0.67 0.208837
Target:  5'- uGCCCCUCu-GCa--GCGGCACCgcgCUGCg -3'
miRNA:   3'- -CGGGGGGuuCGggcUGCCGUGG---GACG- -5'
27469 5' -63.2 NC_005869.1 + 25049 0.67 0.208837
Target:  5'- cGCCCUUCAAccGCCUGGUGGCGCUCa-- -3'
miRNA:   3'- -CGGGGGGUU--CGGGCUGCCGUGGGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.