miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27469 5' -63.2 NC_005869.1 + 4900 0.7 0.129053
Target:  5'- --gCCCCGAGCCCucgguggcaacGACGaGCugCUUGCc -3'
miRNA:   3'- cggGGGGUUCGGG-----------CUGC-CGugGGACG- -5'
27469 5' -63.2 NC_005869.1 + 5489 0.66 0.225699
Target:  5'- aGCUUgCCGGGgCCG-CGGUGCCC-GCa -3'
miRNA:   3'- -CGGGgGGUUCgGGCuGCCGUGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 8501 0.66 0.230978
Target:  5'- aGCCCCCgCGugccggccuccgcGGCCuCGGCGGCGgCg-GCc -3'
miRNA:   3'- -CGGGGG-GU-------------UCGG-GCUGCCGUgGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 9110 0.66 0.249963
Target:  5'- cGCCCUCgucggggagUggGCUCGcGCGGCGCaCCaGCa -3'
miRNA:   3'- -CGGGGG---------GuuCGGGC-UGCCGUG-GGaCG- -5'
27469 5' -63.2 NC_005869.1 + 9472 0.73 0.067774
Target:  5'- cGCCCuCCCGgggccgcAGCUCGAaGGCGCCCccGCg -3'
miRNA:   3'- -CGGG-GGGU-------UCGGGCUgCCGUGGGa-CG- -5'
27469 5' -63.2 NC_005869.1 + 9630 0.66 0.219954
Target:  5'- gGCCUCCgCGgcuGCgCCGGgGGCGgccUCCUGCa -3'
miRNA:   3'- -CGGGGG-GUu--CG-GGCUgCCGU---GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 10312 0.83 0.011833
Target:  5'- cGCCCCCCGcgcccggugaccccgAGCCCGGCGGUggcccgGCCgCUGCu -3'
miRNA:   3'- -CGGGGGGU---------------UCGGGCUGCCG------UGG-GACG- -5'
27469 5' -63.2 NC_005869.1 + 10424 0.67 0.211021
Target:  5'- uCCCCCUgaagguggaugucaaGGGCCUGACGcuGCugCCggacgGCa -3'
miRNA:   3'- cGGGGGG---------------UUCGGGCUGC--CGugGGa----CG- -5'
27469 5' -63.2 NC_005869.1 + 13086 0.66 0.236966
Target:  5'- gGCCCUCCAccccGGCCCucucGCgcgucccgucccgGGCAuccuCCCUGCu -3'
miRNA:   3'- -CGGGGGGU----UCGGGc---UG-------------CCGU----GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 14994 0.69 0.147853
Target:  5'- uUCCCCguGGCgCGAUGGCACagagaUGCa -3'
miRNA:   3'- cGGGGGguUCGgGCUGCCGUGgg---ACG- -5'
27469 5' -63.2 NC_005869.1 + 15986 0.68 0.160299
Target:  5'- cGCgCCCCAGGCgCCGcuggacgggGCGGCG-CgUGCg -3'
miRNA:   3'- -CGgGGGGUUCG-GGC---------UGCCGUgGgACG- -5'
27469 5' -63.2 NC_005869.1 + 16175 0.72 0.078269
Target:  5'- aCCCCUCAucGGCCCccGGCGGUACCgccgcCUGCc -3'
miRNA:   3'- cGGGGGGU--UCGGG--CUGCCGUGG-----GACG- -5'
27469 5' -63.2 NC_005869.1 + 16571 0.69 0.14005
Target:  5'- cGCCgCCCCuAGCCCcGCGGCGguCCagccgGCg -3'
miRNA:   3'- -CGG-GGGGuUCGGGcUGCCGU--GGga---CG- -5'
27469 5' -63.2 NC_005869.1 + 16630 0.67 0.203463
Target:  5'- gGCCggCCCCAGGCCguCG-UGGCGCCgCaGCu -3'
miRNA:   3'- -CGG--GGGGUUCGG--GCuGCCGUGG-GaCG- -5'
27469 5' -63.2 NC_005869.1 + 16793 0.66 0.237572
Target:  5'- uGCCgCCCAccGCCaCGGaGGUgGCCCUGCc -3'
miRNA:   3'- -CGGgGGGUu-CGG-GCUgCCG-UGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 16861 0.67 0.216567
Target:  5'- aGCUCCCUGAccCCCGGCcuccgcgcgcugaugGGCACCgaGCg -3'
miRNA:   3'- -CGGGGGGUUc-GGGCUG---------------CCGUGGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 17013 0.68 0.178362
Target:  5'- aUCCCggCCAGGCagccCCGcACGGUAuCCCUGCc -3'
miRNA:   3'- cGGGG--GGUUCG----GGC-UGCCGU-GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 17116 0.72 0.080503
Target:  5'- cGCCCCCCGcccgaccGGCCaccgucuccguggggGugGGCACCgaGCc -3'
miRNA:   3'- -CGGGGGGU-------UCGGg--------------CugCCGUGGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 17131 0.68 0.164654
Target:  5'- gGCgCCUCCAGGaCUgGAacCGGCACCC-GCu -3'
miRNA:   3'- -CG-GGGGGUUC-GGgCU--GCCGUGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 17410 0.73 0.075455
Target:  5'- uGCCCCCCAccccgcgcGcCCCGGugguuccgguggccCGGCGCCCgcgGCg -3'
miRNA:   3'- -CGGGGGGUu-------C-GGGCU--------------GCCGUGGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.