miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27469 5' -63.2 NC_005869.1 + 25846 1.11 0.000065
Target:  5'- gGCCCCCCAAGCCCGACGGCACCCUGCc -3'
miRNA:   3'- -CGGGGGGUUCGGGCUGCCGUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 10312 0.83 0.011833
Target:  5'- cGCCCCCCGcgcccggugaccccgAGCCCGGCGGUggcccgGCCgCUGCu -3'
miRNA:   3'- -CGGGGGGU---------------UCGGGCUGCCG------UGG-GACG- -5'
27469 5' -63.2 NC_005869.1 + 26275 0.77 0.036249
Target:  5'- cGCCUUCaAGGCCCuGCGGCacGCCCUGCa -3'
miRNA:   3'- -CGGGGGgUUCGGGcUGCCG--UGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 18308 0.75 0.049701
Target:  5'- uGCCUCCgGGGUCC-ACGGUGCCCUGg -3'
miRNA:   3'- -CGGGGGgUUCGGGcUGCCGUGGGACg -5'
27469 5' -63.2 NC_005869.1 + 28272 0.74 0.057321
Target:  5'- gGCaCCCCCAucgCCGAcCGGC-CCCUGCg -3'
miRNA:   3'- -CG-GGGGGUucgGGCU-GCCGuGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 17479 0.74 0.060677
Target:  5'- aGCCCCUCcAGCCCcGCGcGCGCCgCgUGCg -3'
miRNA:   3'- -CGGGGGGuUCGGGcUGC-CGUGG-G-ACG- -5'
27469 5' -63.2 NC_005869.1 + 9472 0.73 0.067774
Target:  5'- cGCCCuCCCGgggccgcAGCUCGAaGGCGCCCccGCg -3'
miRNA:   3'- -CGGG-GGGU-------UCGGGCUgCCGUGGGa-CG- -5'
27469 5' -63.2 NC_005869.1 + 23860 0.73 0.07398
Target:  5'- cGCCCCaCCu-GCUCGugGGCuaccaGCaCCUGCu -3'
miRNA:   3'- -CGGGG-GGuuCGGGCugCCG-----UG-GGACG- -5'
27469 5' -63.2 NC_005869.1 + 17410 0.73 0.075455
Target:  5'- uGCCCCCCAccccgcgcGcCCCGGugguuccgguggccCGGCGCCCgcgGCg -3'
miRNA:   3'- -CGGGGGGUu-------C-GGGCU--------------GCCGUGGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 25810 0.72 0.078269
Target:  5'- aCCCCCC--GCCCGAgGGCccgccGCCCcGCc -3'
miRNA:   3'- cGGGGGGuuCGGGCUgCCG-----UGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 16175 0.72 0.078269
Target:  5'- aCCCCUCAucGGCCCccGGCGGUACCgccgcCUGCc -3'
miRNA:   3'- cGGGGGGU--UCGGG--CUGCCGUGG-----GACG- -5'
27469 5' -63.2 NC_005869.1 + 17116 0.72 0.080503
Target:  5'- cGCCCCCCGcccgaccGGCCaccgucuccguggggGugGGCACCgaGCc -3'
miRNA:   3'- -CGGGGGGU-------UCGGg--------------CugCCGUGGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 27500 0.72 0.082564
Target:  5'- uGCCCCCCuacuGCUCccgcaagGGCGGCcGCCuCUGCu -3'
miRNA:   3'- -CGGGGGGuu--CGGG-------CUGCCG-UGG-GACG- -5'
27469 5' -63.2 NC_005869.1 + 29806 0.71 0.09261
Target:  5'- uGCCCCCCGcacccAGCCCuccagUGGCuuuaCCUGCa -3'
miRNA:   3'- -CGGGGGGU-----UCGGGcu---GCCGug--GGACG- -5'
27469 5' -63.2 NC_005869.1 + 18045 0.71 0.10643
Target:  5'- cGCCgCCCC--GUCCaGCGGCGCCUgggGCg -3'
miRNA:   3'- -CGG-GGGGuuCGGGcUGCCGUGGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 26030 0.71 0.109418
Target:  5'- cGCCCCaUCGGcuccCCCGAgGGCACCCgccGCc -3'
miRNA:   3'- -CGGGG-GGUUc---GGGCUgCCGUGGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 18430 0.7 0.112484
Target:  5'- cGCaCCCCCAggauGGCCgGcGCGGaGCgCCUGCg -3'
miRNA:   3'- -CG-GGGGGU----UCGGgC-UGCCgUG-GGACG- -5'
27469 5' -63.2 NC_005869.1 + 17585 0.7 0.11563
Target:  5'- gGUCCCCC--GCCCu-CGGCugCCgagGCg -3'
miRNA:   3'- -CGGGGGGuuCGGGcuGCCGugGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 18757 0.7 0.129053
Target:  5'- cGCCCCCgCcccGGCCCccGCGGC-UCCUGUg -3'
miRNA:   3'- -CGGGGG-Gu--UCGGGc-UGCCGuGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 4900 0.7 0.129053
Target:  5'- --gCCCCGAGCCCucgguggcaacGACGaGCugCUUGCc -3'
miRNA:   3'- cggGGGGUUCGGG-----------CUGC-CGugGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.