miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27469 5' -63.2 NC_005869.1 + 24488 0.67 0.213779
Target:  5'- cCCCCgCCAcGCCgCcGCGGCGCCaggagaacggaacCUGCg -3'
miRNA:   3'- cGGGG-GGUuCGG-GcUGCCGUGG-------------GACG- -5'
27469 5' -63.2 NC_005869.1 + 15986 0.68 0.160299
Target:  5'- cGCgCCCCAGGCgCCGcuggacgggGCGGCG-CgUGCg -3'
miRNA:   3'- -CGgGGGGUUCG-GGC---------UGCCGUgGgACG- -5'
27469 5' -63.2 NC_005869.1 + 24408 0.68 0.160299
Target:  5'- cGCCCCCgGcgcAGCCgCGGaggccgccgaGGCGCCCUcggugGCg -3'
miRNA:   3'- -CGGGGGgU---UCGG-GCUg---------CCGUGGGA-----CG- -5'
27469 5' -63.2 NC_005869.1 + 25480 0.68 0.169115
Target:  5'- uCCCCaCCAAGCUCGuagagACCCUGCa -3'
miRNA:   3'- cGGGG-GGUUCGGGCugccgUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 17013 0.68 0.178362
Target:  5'- aUCCCggCCAGGCagccCCGcACGGUAuCCCUGCc -3'
miRNA:   3'- cGGGG--GGUUCG----GGC-UGCCGU-GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 29202 0.67 0.19769
Target:  5'- aGUCCCCCAucacCCUGACcgccgagGGCAucuCCCUGUc -3'
miRNA:   3'- -CGGGGGGUuc--GGGCUG-------CCGU---GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 16630 0.67 0.203463
Target:  5'- gGCCggCCCCAGGCCguCG-UGGCGCCgCaGCu -3'
miRNA:   3'- -CGG--GGGGUUCGG--GCuGCCGUGG-GaCG- -5'
27469 5' -63.2 NC_005869.1 + 17865 0.67 0.208294
Target:  5'- aCCgCCgGGGgCCGAugaggggUGGCAUCCUGCc -3'
miRNA:   3'- cGGgGGgUUCgGGCU-------GCCGUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 27478 0.67 0.208837
Target:  5'- aGCaCUCUCcGGCCgGACGGCAUCUUccaGCu -3'
miRNA:   3'- -CG-GGGGGuUCGGgCUGCCGUGGGA---CG- -5'
27469 5' -63.2 NC_005869.1 + 28617 0.69 0.14005
Target:  5'- cGCCCCUCA--CCUauGugGG-ACCCUGCg -3'
miRNA:   3'- -CGGGGGGUucGGG--CugCCgUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 16571 0.69 0.14005
Target:  5'- cGCCgCCCCuAGCCCcGCGGCGguCCagccgGCg -3'
miRNA:   3'- -CGG-GGGGuUCGGGcUGCCGU--GGga---CG- -5'
27469 5' -63.2 NC_005869.1 + 23380 0.69 0.137784
Target:  5'- aGCCCCuCCGAGCCgCuGCGGUgcugccagaucacgcACCC-GCa -3'
miRNA:   3'- -CGGGG-GGUUCGG-GcUGCCG---------------UGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 18308 0.75 0.049701
Target:  5'- uGCCUCCgGGGUCC-ACGGUGCCCUGg -3'
miRNA:   3'- -CGGGGGgUUCGGGcUGCCGUGGGACg -5'
27469 5' -63.2 NC_005869.1 + 17479 0.74 0.060677
Target:  5'- aGCCCCUCcAGCCCcGCGcGCGCCgCgUGCg -3'
miRNA:   3'- -CGGGGGGuUCGGGcUGC-CGUGG-G-ACG- -5'
27469 5' -63.2 NC_005869.1 + 9472 0.73 0.067774
Target:  5'- cGCCCuCCCGgggccgcAGCUCGAaGGCGCCCccGCg -3'
miRNA:   3'- -CGGG-GGGU-------UCGGGCUgCCGUGGGa-CG- -5'
27469 5' -63.2 NC_005869.1 + 17410 0.73 0.075455
Target:  5'- uGCCCCCCAccccgcgcGcCCCGGugguuccgguggccCGGCGCCCgcgGCg -3'
miRNA:   3'- -CGGGGGGUu-------C-GGGCU--------------GCCGUGGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 17116 0.72 0.080503
Target:  5'- cGCCCCCCGcccgaccGGCCaccgucuccguggggGugGGCACCgaGCc -3'
miRNA:   3'- -CGGGGGGU-------UCGGg--------------CugCCGUGGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 17585 0.7 0.11563
Target:  5'- gGUCCCCC--GCCCu-CGGCugCCgagGCg -3'
miRNA:   3'- -CGGGGGGuuCGGGcuGCCGugGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 18757 0.7 0.129053
Target:  5'- cGCCCCCgCcccGGCCCccGCGGC-UCCUGUg -3'
miRNA:   3'- -CGGGGG-Gu--UCGGGc-UGCCGuGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 25563 0.69 0.132627
Target:  5'- -gUCCUCGAGCgCucCGGCAUCCUGCc -3'
miRNA:   3'- cgGGGGGUUCGgGcuGCCGUGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.