miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27469 5' -63.2 NC_005869.1 + 17116 0.72 0.080503
Target:  5'- cGCCCCCCGcccgaccGGCCaccgucuccguggggGugGGCACCgaGCc -3'
miRNA:   3'- -CGGGGGGU-------UCGGg--------------CugCCGUGGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 17585 0.7 0.11563
Target:  5'- gGUCCCCC--GCCCu-CGGCugCCgagGCg -3'
miRNA:   3'- -CGGGGGGuuCGGGcuGCCGugGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 18757 0.7 0.129053
Target:  5'- cGCCCCCgCcccGGCCCccGCGGC-UCCUGUg -3'
miRNA:   3'- -CGGGGG-Gu--UCGGGc-UGCCGuGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 25563 0.69 0.132627
Target:  5'- -gUCCUCGAGCgCucCGGCAUCCUGCc -3'
miRNA:   3'- cgGGGGGUUCGgGcuGCCGUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 23380 0.69 0.137784
Target:  5'- aGCCCCuCCGAGCCgCuGCGGUgcugccagaucacgcACCC-GCa -3'
miRNA:   3'- -CGGGG-GGUUCGG-GcUGCCG---------------UGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 16571 0.69 0.14005
Target:  5'- cGCCgCCCCuAGCCCcGCGGCGguCCagccgGCg -3'
miRNA:   3'- -CGG-GGGGuUCGGGcUGCCGU--GGga---CG- -5'
27469 5' -63.2 NC_005869.1 + 28617 0.69 0.14005
Target:  5'- cGCCCCUCA--CCUauGugGG-ACCCUGCg -3'
miRNA:   3'- -CGGGGGGUucGGG--CugCCgUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 25049 0.67 0.208837
Target:  5'- cGCCCUUCAAccGCCUGGUGGCGCUCa-- -3'
miRNA:   3'- -CGGGGGGUU--CGGGCUGCCGUGGGacg -5'
27469 5' -63.2 NC_005869.1 + 24528 0.67 0.208837
Target:  5'- uGCCCCUCu-GCa--GCGGCACCgcgCUGCg -3'
miRNA:   3'- -CGGGGGGuuCGggcUGCCGUGG---GACG- -5'
27469 5' -63.2 NC_005869.1 + 25526 0.67 0.203463
Target:  5'- cGCCgCCgAGGCCgCGGaggcCGGCACgcgggggcuCCUGCu -3'
miRNA:   3'- -CGGgGGgUUCGG-GCU----GCCGUG---------GGACG- -5'
27469 5' -63.2 NC_005869.1 + 20284 0.67 0.188055
Target:  5'- cGCCCCUCGguggGGCCCa--GGUACCgCgGCg -3'
miRNA:   3'- -CGGGGGGU----UCGGGcugCCGUGG-GaCG- -5'
27469 5' -63.2 NC_005869.1 + 26409 0.68 0.178362
Target:  5'- aCCCCCUGGccuauGCCCagcuGCGGCGCcgccgCCUGCg -3'
miRNA:   3'- cGGGGGGUU-----CGGGc---UGCCGUG-----GGACG- -5'
27469 5' -63.2 NC_005869.1 + 10424 0.67 0.211021
Target:  5'- uCCCCCUgaagguggaugucaaGGGCCUGACGcuGCugCCggacgGCa -3'
miRNA:   3'- cGGGGGG---------------UUCGGGCUGC--CGugGGa----CG- -5'
27469 5' -63.2 NC_005869.1 + 9630 0.66 0.219954
Target:  5'- gGCCUCCgCGgcuGCgCCGGgGGCGgccUCCUGCa -3'
miRNA:   3'- -CGGGGG-GUu--CG-GGCUgCCGU---GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 30739 0.66 0.231571
Target:  5'- cUCCCCCAuccaaAGCCCaucccacugGGCGGgGCCacguacCUGCa -3'
miRNA:   3'- cGGGGGGU-----UCGGG---------CUGCCgUGG------GACG- -5'
27469 5' -63.2 NC_005869.1 + 21777 0.66 0.231571
Target:  5'- --gCCCCGAGCggaacaccuCCGucuGCGGCACCUcGCu -3'
miRNA:   3'- cggGGGGUUCG---------GGC---UGCCGUGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 29066 0.66 0.237572
Target:  5'- uGCCCuUCCucacCCCGGCuGGCACCUgccGCu -3'
miRNA:   3'- -CGGG-GGGuuc-GGGCUG-CCGUGGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 18530 0.66 0.243702
Target:  5'- gGUCCCCCGuGGUCUGcaugcgcgaagaACGGCGCCgCgcgcgGCg -3'
miRNA:   3'- -CGGGGGGU-UCGGGC------------UGCCGUGG-Ga----CG- -5'
27469 5' -63.2 NC_005869.1 + 9110 0.66 0.249963
Target:  5'- cGCCCUCgucggggagUggGCUCGcGCGGCGCaCCaGCa -3'
miRNA:   3'- -CGGGGG---------GuuCGGGC-UGCCGUG-GGaCG- -5'
27469 5' -63.2 NC_005869.1 + 10312 0.83 0.011833
Target:  5'- cGCCCCCCGcgcccggugaccccgAGCCCGGCGGUggcccgGCCgCUGCu -3'
miRNA:   3'- -CGGGGGGU---------------UCGGGCUGCCG------UGG-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.