Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 26508 | 1.12 | 0.000164 |
Target: 5'- cAGCGCAGGAACUCCGUCGUCCCCAGCg -3' miRNA: 3'- -UCGCGUCCUUGAGGCAGCAGGGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 9302 | 0.82 | 0.032153 |
Target: 5'- uGGCGCAGGccGGCUCC-UCGUCCCCcaGGCc -3' miRNA: 3'- -UCGCGUCC--UUGAGGcAGCAGGGG--UCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 8749 | 0.75 | 0.097998 |
Target: 5'- uGGCGCAGGAuCUCgGacaCGUCCCC-GCu -3' miRNA: 3'- -UCGCGUCCUuGAGgCa--GCAGGGGuCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 17929 | 0.74 | 0.125569 |
Target: 5'- uGCuGCAGGAugUCCGuguccgcauacaacUCGUCCCagAGCg -3' miRNA: 3'- uCG-CGUCCUugAGGC--------------AGCAGGGg-UCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 21356 | 0.73 | 0.149853 |
Target: 5'- uAGCGCAGGAugcGCUCC----UCCUCGGCg -3' miRNA: 3'- -UCGCGUCCU---UGAGGcagcAGGGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 27752 | 0.72 | 0.167418 |
Target: 5'- cGGCuGCGGGAGCUCC-UCGa--CCAGCa -3' miRNA: 3'- -UCG-CGUCCUUGAGGcAGCaggGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 32269 | 0.72 | 0.178824 |
Target: 5'- gAGCGCAGGGGCccaggugcCCGgccCGUgcgcucgcucaacucCCCCAGCa -3' miRNA: 3'- -UCGCGUCCUUGa-------GGCa--GCA---------------GGGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 16673 | 0.71 | 0.202621 |
Target: 5'- cGGCGCuGGAGCgggcggcggCCGcCGUgCCCCuGCc -3' miRNA: 3'- -UCGCGuCCUUGa--------GGCaGCA-GGGGuCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 18853 | 0.7 | 0.2138 |
Target: 5'- gAGCGCAGGc---CCa--GUCCCCAGCc -3' miRNA: 3'- -UCGCGUCCuugaGGcagCAGGGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 24638 | 0.7 | 0.225504 |
Target: 5'- gAGCGCuucguGGAccggcugcccuuGCgCCGgcgcCGUCCCCGGCc -3' miRNA: 3'- -UCGCGu----CCU------------UGaGGCa---GCAGGGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 10094 | 0.69 | 0.2639 |
Target: 5'- gGGUGCugauuguGGAcgacGCUCCuGUCGcgacCCCCAGCc -3' miRNA: 3'- -UCGCGu------CCU----UGAGG-CAGCa---GGGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 6043 | 0.69 | 0.2639 |
Target: 5'- -uCGCAGGccucgucaccgGAgUCCG-CGUCUCCGGCg -3' miRNA: 3'- ucGCGUCC-----------UUgAGGCaGCAGGGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 26367 | 0.69 | 0.270792 |
Target: 5'- uGGCGCAGGAGCgg-Gg---CCCCGGCc -3' miRNA: 3'- -UCGCGUCCUUGaggCagcaGGGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 7080 | 0.69 | 0.277829 |
Target: 5'- uAGCGCAGGGuggccuggACgaugUCGUaagCGUCCCCcuGGCu -3' miRNA: 3'- -UCGCGUCCU--------UGa---GGCA---GCAGGGG--UCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 15595 | 0.69 | 0.277829 |
Target: 5'- cGGCGCAGGcGCUCCG-CG---CCGGCc -3' miRNA: 3'- -UCGCGUCCuUGAGGCaGCaggGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 6654 | 0.68 | 0.307434 |
Target: 5'- gGGUGCGaGGGCUCCGc---CCCCGGCu -3' miRNA: 3'- -UCGCGUcCUUGAGGCagcaGGGGUCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 7880 | 0.68 | 0.315202 |
Target: 5'- cAGCGCGGcGuccagcAGCUCC-UCGUCCCCcgagaGGUg -3' miRNA: 3'- -UCGCGUC-C------UUGAGGcAGCAGGGG-----UCG- -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 24552 | 0.68 | 0.33118 |
Target: 5'- uGCGCGGGGGCgCCuUCGagcugcggCCCCGGg -3' miRNA: 3'- uCGCGUCCUUGaGGcAGCa-------GGGGUCg -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 9090 | 0.68 | 0.33118 |
Target: 5'- cGGCGCAGGGucaGCU-CGUugaUGUCgCCCAGg -3' miRNA: 3'- -UCGCGUCCU---UGAgGCA---GCAG-GGGUCg -5' |
|||||||
27470 | 5' | -58.5 | NC_005869.1 | + | 21640 | 0.67 | 0.347747 |
Target: 5'- gGGCGUcagcagggAGGAcacguGC-CCG-CGcUCCCCAGCg -3' miRNA: 3'- -UCGCG--------UCCU-----UGaGGCaGC-AGGGGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home