miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 5' -58.5 NC_005869.1 + 26508 1.12 0.000164
Target:  5'- cAGCGCAGGAACUCCGUCGUCCCCAGCg -3'
miRNA:   3'- -UCGCGUCCUUGAGGCAGCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 6503 0.66 0.429366
Target:  5'- cGCGgAGGGGCU-CGUUGg-UCCAGCa -3'
miRNA:   3'- uCGCgUCCUUGAgGCAGCagGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 15560 0.66 0.419749
Target:  5'- aAGCGguGGcGCgCCGgaggCGgagCaCCCGGCg -3'
miRNA:   3'- -UCGCguCCuUGaGGCa---GCa--G-GGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 5759 0.66 0.389871
Target:  5'- gAGCGCAGGGGC-CgGUCGgcgaugggggugCCgCGGUc -3'
miRNA:   3'- -UCGCGUCCUUGaGgCAGCa-----------GGgGUCG- -5'
27470 5' -58.5 NC_005869.1 + 33059 0.67 0.382622
Target:  5'- aGGCaGCAGGggUa----CGUCCCCAGUg -3'
miRNA:   3'- -UCG-CGUCCuuGaggcaGCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 23228 0.67 0.373688
Target:  5'- uGCGCAGcuGCaccaCGUUGcggCCCCAGCg -3'
miRNA:   3'- uCGCGUCcuUGag--GCAGCa--GGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 22996 0.67 0.364897
Target:  5'- cGGCccaGCAGGGGCaCCuggCGgcagCCCCAGCc -3'
miRNA:   3'- -UCG---CGUCCUUGaGGca-GCa---GGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 9090 0.68 0.33118
Target:  5'- cGGCGCAGGGucaGCU-CGUugaUGUCgCCCAGg -3'
miRNA:   3'- -UCGCGUCCU---UGAgGCA---GCAG-GGGUCg -5'
27470 5' -58.5 NC_005869.1 + 7880 0.68 0.315202
Target:  5'- cAGCGCGGcGuccagcAGCUCC-UCGUCCCCcgagaGGUg -3'
miRNA:   3'- -UCGCGUC-C------UUGAGGcAGCAGGGG-----UCG- -5'
27470 5' -58.5 NC_005869.1 + 15595 0.69 0.277829
Target:  5'- cGGCGCAGGcGCUCCG-CG---CCGGCc -3'
miRNA:   3'- -UCGCGUCCuUGAGGCaGCaggGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 8749 0.75 0.097998
Target:  5'- uGGCGCAGGAuCUCgGacaCGUCCCC-GCu -3'
miRNA:   3'- -UCGCGUCCUuGAGgCa--GCAGGGGuCG- -5'
27470 5' -58.5 NC_005869.1 + 27752 0.72 0.167418
Target:  5'- cGGCuGCGGGAGCUCC-UCGa--CCAGCa -3'
miRNA:   3'- -UCG-CGUCCUUGAGGcAGCaggGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 32269 0.72 0.178824
Target:  5'- gAGCGCAGGGGCccaggugcCCGgccCGUgcgcucgcucaacucCCCCAGCa -3'
miRNA:   3'- -UCGCGUCCUUGa-------GGCa--GCA---------------GGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 16673 0.71 0.202621
Target:  5'- cGGCGCuGGAGCgggcggcggCCGcCGUgCCCCuGCc -3'
miRNA:   3'- -UCGCGuCCUUGa--------GGCaGCA-GGGGuCG- -5'
27470 5' -58.5 NC_005869.1 + 6043 0.69 0.2639
Target:  5'- -uCGCAGGccucgucaccgGAgUCCG-CGUCUCCGGCg -3'
miRNA:   3'- ucGCGUCC-----------UUgAGGCaGCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 7080 0.69 0.277829
Target:  5'- uAGCGCAGGGuggccuggACgaugUCGUaagCGUCCCCcuGGCu -3'
miRNA:   3'- -UCGCGUCCU--------UGa---GGCA---GCAGGGG--UCG- -5'
27470 5' -58.5 NC_005869.1 + 9302 0.82 0.032153
Target:  5'- uGGCGCAGGccGGCUCC-UCGUCCCCcaGGCc -3'
miRNA:   3'- -UCGCGUCC--UUGAGGcAGCAGGGG--UCG- -5'
27470 5' -58.5 NC_005869.1 + 9530 0.66 0.419749
Target:  5'- gGGCGCAGGuuccguuCUCCuggCG-CCgCGGCg -3'
miRNA:   3'- -UCGCGUCCuu-----GAGGca-GCaGGgGUCG- -5'
27470 5' -58.5 NC_005869.1 + 12154 0.66 0.388051
Target:  5'- uGCGCG---GCUCCGccuuaggugguggCGUUCCCGGCg -3'
miRNA:   3'- uCGCGUccuUGAGGCa------------GCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 22293 0.67 0.386236
Target:  5'- gGGCGcCAGGGAggccgcgcucaccccCgccgCCGcCG-CCCCAGCu -3'
miRNA:   3'- -UCGC-GUCCUU---------------Ga---GGCaGCaGGGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.