miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27471 3' -61.1 NC_005869.1 + 8227 0.69 0.150505
Target:  5'- gGGCGGCgGGCccucgGGCGGGGggucCCAGCgCACg -3'
miRNA:   3'- gUCGCCG-CCG-----UCGUCUU----GGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 6980 0.69 0.150505
Target:  5'- ---aGGCGGCuGgGGAagGCCGGCCUGCg -3'
miRNA:   3'- gucgCCGCCGuCgUCU--UGGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 8531 0.7 0.146355
Target:  5'- gCGGCGGCGGCcggucucaGGCGGGcaGCUGGgCCAg -3'
miRNA:   3'- -GUCGCCGCCG--------UCGUCU--UGGUCgGGUg -5'
27471 3' -61.1 NC_005869.1 + 16935 0.7 0.146355
Target:  5'- gGGCgGGgGGCGccuGCAGGACUugggcuGCCCGCg -3'
miRNA:   3'- gUCG-CCgCCGU---CGUCUUGGu-----CGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 10249 0.7 0.146355
Target:  5'- gCAGCGGCGaCGGCG----CGGCCCGCg -3'
miRNA:   3'- -GUCGCCGCcGUCGUcuugGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 5441 0.7 0.142311
Target:  5'- gGGCGGUGGCAGCggcGGGGCgCGGuuCCUGCu -3'
miRNA:   3'- gUCGCCGCCGUCG---UCUUG-GUC--GGGUG- -5'
27471 3' -61.1 NC_005869.1 + 23003 0.7 0.138368
Target:  5'- gCAGgGGCaccuGGCGGCAGccCCAGCCgCAg -3'
miRNA:   3'- -GUCgCCG----CCGUCGUCuuGGUCGG-GUg -5'
27471 3' -61.1 NC_005869.1 + 2638 0.7 0.138368
Target:  5'- gCAGCGGCGGgGGaGGAAgCAGCaguuCACg -3'
miRNA:   3'- -GUCGCCGCCgUCgUCUUgGUCGg---GUG- -5'
27471 3' -61.1 NC_005869.1 + 6672 0.7 0.134527
Target:  5'- cCAGCGGCgGGCGGcCAGGGCgCGGUCgAa -3'
miRNA:   3'- -GUCGCCG-CCGUC-GUCUUG-GUCGGgUg -5'
27471 3' -61.1 NC_005869.1 + 7833 0.71 0.123583
Target:  5'- uGGUGGCGGCGGCGGuGGCuCGGCUg-- -3'
miRNA:   3'- gUCGCCGCCGUCGUC-UUG-GUCGGgug -5'
27471 3' -61.1 NC_005869.1 + 15545 0.71 0.123583
Target:  5'- uGGUGGCGGCGGUGGAAgCGGUggCGCg -3'
miRNA:   3'- gUCGCCGCCGUCGUCUUgGUCGg-GUG- -5'
27471 3' -61.1 NC_005869.1 + 26184 0.71 0.120123
Target:  5'- aGGUGGUGGCcgucCAGAGCCcGCCUGCa -3'
miRNA:   3'- gUCGCCGCCGuc--GUCUUGGuCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 10159 0.71 0.116753
Target:  5'- gCAGaGGC-GCAGCAGGugCugguAGCCCACg -3'
miRNA:   3'- -GUCgCCGcCGUCGUCUugG----UCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 18415 0.71 0.113471
Target:  5'- aGGCGGCGGCuGCGGcgcACCcccaggauGGCCgGCg -3'
miRNA:   3'- gUCGCCGCCGuCGUCu--UGG--------UCGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 17847 0.71 0.107164
Target:  5'- gCGGCGGCaGGCGGCGGuACCgccgggGGCCgAUg -3'
miRNA:   3'- -GUCGCCG-CCGUCGUCuUGG------UCGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 20732 0.72 0.104136
Target:  5'- gCGGCGGcCGGCGGCGGcGCCuggguGCUCGu -3'
miRNA:   3'- -GUCGCC-GCCGUCGUCuUGGu----CGGGUg -5'
27471 3' -61.1 NC_005869.1 + 17847 0.72 0.101188
Target:  5'- -cGCGGgGGuCGGCgaGGGGCgGGCCCGCc -3'
miRNA:   3'- guCGCCgCC-GUCG--UCUUGgUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 15481 0.72 0.098319
Target:  5'- gGGCGGCGGCgggcgcuuGGCGGGACgu-CCCGCg -3'
miRNA:   3'- gUCGCCGCCG--------UCGUCUUGgucGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 15303 0.72 0.095527
Target:  5'- gCGGCGGCGGCAGCGGAGgaGGUg--- -3'
miRNA:   3'- -GUCGCCGCCGUCGUCUUggUCGggug -5'
27471 3' -61.1 NC_005869.1 + 18673 0.72 0.095527
Target:  5'- uGGCGGCgccGGCGGCGGGuggcGCCGGCgaucgcguugaCCACg -3'
miRNA:   3'- gUCGCCG---CCGUCGUCU----UGGUCG-----------GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.