miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27471 3' -61.1 NC_005869.1 + 8531 0.7 0.146355
Target:  5'- gCGGCGGCGGCcggucucaGGCGGGcaGCUGGgCCAg -3'
miRNA:   3'- -GUCGCCGCCG--------UCGUCU--UGGUCgGGUg -5'
27471 3' -61.1 NC_005869.1 + 8854 0.66 0.265365
Target:  5'- aCGGUGGCGGCcaggucgacGguGAugCGGUUCAUg -3'
miRNA:   3'- -GUCGCCGCCGu--------CguCUugGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 9260 0.66 0.265365
Target:  5'- gGGCGGgGGCGuGCuGGGuCCGGCcaCCGCc -3'
miRNA:   3'- gUCGCCgCCGU-CGuCUU-GGUCG--GGUG- -5'
27471 3' -61.1 NC_005869.1 + 9386 0.68 0.192898
Target:  5'- aCGGCGcCGGCgcaagGGCA--GCCGGUCCACg -3'
miRNA:   3'- -GUCGCcGCCG-----UCGUcuUGGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 9646 0.69 0.150505
Target:  5'- cCGGgGGCGGCcuccuGCAGGACCuGGCgCAg -3'
miRNA:   3'- -GUCgCCGCCGu----CGUCUUGG-UCGgGUg -5'
27471 3' -61.1 NC_005869.1 + 9781 0.66 0.265365
Target:  5'- -uGCGGcCGGCgcgcugcaGGCGGAugCGGUCgGCc -3'
miRNA:   3'- guCGCC-GCCG--------UCGUCUugGUCGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 9927 0.66 0.272308
Target:  5'- aGGgGGC-GCAGCAGcGCCAGgucggccaCCACg -3'
miRNA:   3'- gUCgCCGcCGUCGUCuUGGUCg-------GGUG- -5'
27471 3' -61.1 NC_005869.1 + 9963 0.73 0.073358
Target:  5'- uGGUGGCGGCGgaaggguggggccGCGGAGgaccCCAGCUCACu -3'
miRNA:   3'- gUCGCCGCCGU-------------CGUCUU----GGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 10159 0.71 0.116753
Target:  5'- gCAGaGGC-GCAGCAGGugCugguAGCCCACg -3'
miRNA:   3'- -GUCgCCGcCGUCGUCUugG----UCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 10249 0.7 0.146355
Target:  5'- gCAGCGGCGaCGGCG----CGGCCCGCg -3'
miRNA:   3'- -GUCGCCGCcGUCGUcuugGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 10732 0.66 0.25191
Target:  5'- -cGCGGCGGCccccgAGCggcacccacGGGugCAGCUCAa -3'
miRNA:   3'- guCGCCGCCG-----UCG---------UCUugGUCGGGUg -5'
27471 3' -61.1 NC_005869.1 + 10935 0.68 0.203641
Target:  5'- aGGCGGgGGgAgugagcGCGGcGCgGGCCCACa -3'
miRNA:   3'- gUCGCCgCCgU------CGUCuUGgUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 11729 0.77 0.039615
Target:  5'- gGGCGGCGGCGGCGGGggugaGCgCGGCCUc- -3'
miRNA:   3'- gUCGCCGCCGUCGUCU-----UG-GUCGGGug -5'
27471 3' -61.1 NC_005869.1 + 12644 0.66 0.249941
Target:  5'- cCGGCaGCGGCGGCu--GCCGGCggcguaugcccugaCCGCc -3'
miRNA:   3'- -GUCGcCGCCGUCGucuUGGUCG--------------GGUG- -5'
27471 3' -61.1 NC_005869.1 + 12819 0.66 0.279396
Target:  5'- gAGCaGGCGGUcauuGCccGGCCAGgCCACg -3'
miRNA:   3'- gUCG-CCGCCGu---CGucUUGGUCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 15303 0.72 0.095527
Target:  5'- gCGGCGGCGGCAGCGGAGgaGGUg--- -3'
miRNA:   3'- -GUCGCCGCCGUCGUCUUggUCGggug -5'
27471 3' -61.1 NC_005869.1 + 15335 0.67 0.232171
Target:  5'- gAGCGGCGGCGGgGGGcgcAUCuuauuguGGgCCACg -3'
miRNA:   3'- gUCGCCGCCGUCgUCU---UGG-------UCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 15463 0.68 0.192898
Target:  5'- gCGGUGGaGGCGGUAGc-CCGGCgCCGCc -3'
miRNA:   3'- -GUCGCCgCCGUCGUCuuGGUCG-GGUG- -5'
27471 3' -61.1 NC_005869.1 + 15481 0.72 0.098319
Target:  5'- gGGCGGCGGCgggcgcuuGGCGGGACgu-CCCGCg -3'
miRNA:   3'- gUCGCCGCCG--------UCGUCUUGgucGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 15545 0.71 0.123583
Target:  5'- uGGUGGCGGCGGUGGAAgCGGUggCGCg -3'
miRNA:   3'- gUCGCCGCCGUCGUCUUgGUCGg-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.