miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27471 3' -61.1 NC_005869.1 + 169 0.74 0.072295
Target:  5'- gGGCGGgGucaaagucgcaggucGCGGCGGAGCCGGCUgGCg -3'
miRNA:   3'- gUCGCCgC---------------CGUCGUCUUGGUCGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 1944 0.72 0.094704
Target:  5'- gCAGCGG-GGCcgggauGCGGGACCAgguggugcccaagcGCCCGCg -3'
miRNA:   3'- -GUCGCCgCCGu-----CGUCUUGGU--------------CGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 2351 0.66 0.264678
Target:  5'- uGGUGGUucagggaGGCGGU-GAACCuGCCCAg -3'
miRNA:   3'- gUCGCCG-------CCGUCGuCUUGGuCGGGUg -5'
27471 3' -61.1 NC_005869.1 + 2638 0.7 0.138368
Target:  5'- gCAGCGGCGGgGGaGGAAgCAGCaguuCACg -3'
miRNA:   3'- -GUCGCCGCCgUCgUCUUgGUCGg---GUG- -5'
27471 3' -61.1 NC_005869.1 + 2942 0.66 0.245396
Target:  5'- gGGCGGCcGCcugGGCAGcuUCAGCCC-Ca -3'
miRNA:   3'- gUCGCCGcCG---UCGUCuuGGUCGGGuG- -5'
27471 3' -61.1 NC_005869.1 + 5441 0.7 0.142311
Target:  5'- gGGCGGUGGCAGCggcGGGGCgCGGuuCCUGCu -3'
miRNA:   3'- gUCGCCGCCGUCG---UCUUG-GUC--GGGUG- -5'
27471 3' -61.1 NC_005869.1 + 5512 0.74 0.071455
Target:  5'- uGGCGGUGaGCAGgAGGAUgaGGCCCACc -3'
miRNA:   3'- gUCGCCGC-CGUCgUCUUGg-UCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 6115 0.66 0.279396
Target:  5'- -cGCGGUGGCGGCGGucGCUguAGCgCGu -3'
miRNA:   3'- guCGCCGCCGUCGUCu-UGG--UCGgGUg -5'
27471 3' -61.1 NC_005869.1 + 6276 0.67 0.239022
Target:  5'- uGGCGGCGGUgcuGGUcgaGGAGCU--CCCGCa -3'
miRNA:   3'- gUCGCCGCCG---UCG---UCUUGGucGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 6672 0.7 0.134527
Target:  5'- cCAGCGGCgGGCGGcCAGGGCgCGGUCgAa -3'
miRNA:   3'- -GUCGCCG-CCGUC-GUCUUG-GUCGGgUg -5'
27471 3' -61.1 NC_005869.1 + 6980 0.69 0.150505
Target:  5'- ---aGGCGGCuGgGGAagGCCGGCCUGCg -3'
miRNA:   3'- gucgCCGCCGuCgUCU--UGGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 7286 0.66 0.25191
Target:  5'- -cGCGGCGGCcuuGCGGAgGCUGGUgUGCg -3'
miRNA:   3'- guCGCCGCCGu--CGUCU-UGGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 7353 0.68 0.192898
Target:  5'- -uGUGGUGGUagAGUAGGuACCGGCgCACg -3'
miRNA:   3'- guCGCCGCCG--UCGUCU-UGGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 7425 0.69 0.16819
Target:  5'- -cGUGGCGGUAGCGGcGCCAggagcGUCgGCg -3'
miRNA:   3'- guCGCCGCCGUCGUCuUGGU-----CGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 7619 0.67 0.220728
Target:  5'- gCGGCGGCGccGCAGCuGGGCauaGGCCa-- -3'
miRNA:   3'- -GUCGCCGC--CGUCGuCUUGg--UCGGgug -5'
27471 3' -61.1 NC_005869.1 + 7833 0.71 0.123583
Target:  5'- uGGUGGCGGCGGCGGuGGCuCGGCUg-- -3'
miRNA:   3'- gUCGCCGCCGUCGUC-UUG-GUCGGgug -5'
27471 3' -61.1 NC_005869.1 + 8227 0.69 0.150505
Target:  5'- gGGCGGCgGGCccucgGGCGGGGggucCCAGCgCACg -3'
miRNA:   3'- gUCGCCG-CCG-----UCGUCUU----GGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 8268 0.66 0.245396
Target:  5'- uGGUGGCgaGGCAGC-GGugCGGUgCGCa -3'
miRNA:   3'- gUCGCCG--CCGUCGuCUugGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 8304 0.75 0.056506
Target:  5'- aGGUGGgccCGGCGGCGcGGGCCAGCuCCACc -3'
miRNA:   3'- gUCGCC---GCCGUCGU-CUUGGUCG-GGUG- -5'
27471 3' -61.1 NC_005869.1 + 8420 0.73 0.07575
Target:  5'- uGGCGGUGGUAGguGAugcuCCAGCUCu- -3'
miRNA:   3'- gUCGCCGCCGUCguCUu---GGUCGGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.