miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27471 3' -61.1 NC_005869.1 + 26785 1.09 0.000109
Target:  5'- gCAGCGGCGGCAGCAGAACCAGCCCACg -3'
miRNA:   3'- -GUCGCCGCCGUCGUCUUGGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 17549 0.82 0.015198
Target:  5'- cCGGUGGCGGUGGCAGcGCCGcccGCCCGCa -3'
miRNA:   3'- -GUCGCCGCCGUCGUCuUGGU---CGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 24138 0.78 0.032161
Target:  5'- gCAGCaGCGGCAGCAGG---AGCCCACc -3'
miRNA:   3'- -GUCGcCGCCGUCGUCUuggUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 11729 0.77 0.039615
Target:  5'- gGGCGGCGGCGGCGGGggugaGCgCGGCCUc- -3'
miRNA:   3'- gUCGCCGCCGUCGUCU-----UG-GUCGGGug -5'
27471 3' -61.1 NC_005869.1 + 16172 0.75 0.056506
Target:  5'- gAGCccGGCGGCAGCG--GCgGGCCCGCc -3'
miRNA:   3'- gUCG--CCGCCGUCGUcuUGgUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 8304 0.75 0.056506
Target:  5'- aGGUGGgccCGGCGGCGcGGGCCAGCuCCACc -3'
miRNA:   3'- gUCGCC---GCCGUCGU-CUUGGUCG-GGUG- -5'
27471 3' -61.1 NC_005869.1 + 15588 0.75 0.056506
Target:  5'- cCGGCGGCGGC-GCAGGcgcuccgcGCCGGCCa-- -3'
miRNA:   3'- -GUCGCCGCCGuCGUCU--------UGGUCGGgug -5'
27471 3' -61.1 NC_005869.1 + 5512 0.74 0.071455
Target:  5'- uGGCGGUGaGCAGgAGGAUgaGGCCCACc -3'
miRNA:   3'- gUCGCCGC-CGUCgUCUUGg-UCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 169 0.74 0.072295
Target:  5'- gGGCGGgGucaaagucgcaggucGCGGCGGAGCCGGCUgGCg -3'
miRNA:   3'- gUCGCCgC---------------CGUCGUCUUGGUCGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 9963 0.73 0.073358
Target:  5'- uGGUGGCGGCGgaaggguggggccGCGGAGgaccCCAGCUCACu -3'
miRNA:   3'- gUCGCCGCCGU-------------CGUCUU----GGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 16533 0.73 0.073573
Target:  5'- gCAGgaGGUGGUGGUGGAGCC-GCCCGCu -3'
miRNA:   3'- -GUCg-CCGCCGUCGUCUUGGuCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 24768 0.73 0.073573
Target:  5'- aGGCGGCGGUGGcCGGAcCCAGCaCGCc -3'
miRNA:   3'- gUCGCCGCCGUC-GUCUuGGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 17400 0.73 0.073573
Target:  5'- gAGCuGCGGCgccacgacGGCcuGGGGCCGGCCCGCc -3'
miRNA:   3'- gUCGcCGCCG--------UCG--UCUUGGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 27745 0.73 0.07575
Target:  5'- uCAGCaGCGGCuGCGGGagcuccucgACCAGCaCCGCc -3'
miRNA:   3'- -GUCGcCGCCGuCGUCU---------UGGUCG-GGUG- -5'
27471 3' -61.1 NC_005869.1 + 8420 0.73 0.07575
Target:  5'- uGGCGGUGGUAGguGAugcuCCAGCUCu- -3'
miRNA:   3'- gUCGCCGCCGUCguCUu---GGUCGGGug -5'
27471 3' -61.1 NC_005869.1 + 20610 0.73 0.080292
Target:  5'- uGGUGGCGGCGGgAGAAgCuGgCCACg -3'
miRNA:   3'- gUCGCCGCCGUCgUCUUgGuCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 27584 0.73 0.085093
Target:  5'- gCAGCGGCGGCaucGGCAgcGAGCaauuuGUCCGCg -3'
miRNA:   3'- -GUCGCCGCCG---UCGU--CUUGgu---CGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 17577 0.72 0.090167
Target:  5'- nCAGCGGCGGUcccccgcccucGGCugccGAGgCGGCCCAUc -3'
miRNA:   3'- -GUCGCCGCCG-----------UCGu---CUUgGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 1944 0.72 0.094704
Target:  5'- gCAGCGG-GGCcgggauGCGGGACCAgguggugcccaagcGCCCGCg -3'
miRNA:   3'- -GUCGCCgCCGu-----CGUCUUGGU--------------CGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 18673 0.72 0.095527
Target:  5'- uGGCGGCgccGGCGGCGGGuggcGCCGGCgaucgcguugaCCACg -3'
miRNA:   3'- gUCGCCG---CCGUCGUCU----UGGUCG-----------GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.