miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27472 3' -53.3 NC_005869.1 + 969 0.68 0.587356
Target:  5'- aGGUGUCC--CUCAcUGGGGACgUACCc -3'
miRNA:   3'- -CCGUAGGucGAGUuGCUCCUGgAUGG- -5'
27472 3' -53.3 NC_005869.1 + 1928 0.7 0.44551
Target:  5'- gGGuCAUCCGGCaguggCAGCG-GGGCCgggaugcgggACCa -3'
miRNA:   3'- -CC-GUAGGUCGa----GUUGCuCCUGGa---------UGG- -5'
27472 3' -53.3 NC_005869.1 + 2342 0.7 0.44551
Target:  5'- cGCAUCUucugguGGUUCAGgGAGGcggugaACCUGCCc -3'
miRNA:   3'- cCGUAGG------UCGAGUUgCUCC------UGGAUGG- -5'
27472 3' -53.3 NC_005869.1 + 3356 0.66 0.724123
Target:  5'- aGGCAUgCAGCcCcACGGGGAagCUugUg -3'
miRNA:   3'- -CCGUAgGUCGaGuUGCUCCUg-GAugG- -5'
27472 3' -53.3 NC_005869.1 + 5262 0.69 0.531
Target:  5'- gGGCGUCgAGCggGugGAGGGuCCgguCCu -3'
miRNA:   3'- -CCGUAGgUCGagUugCUCCU-GGau-GG- -5'
27472 3' -53.3 NC_005869.1 + 6230 0.67 0.633222
Target:  5'- gGGCGUCCaucuGGCU-GGCGAaGACC-ACCu -3'
miRNA:   3'- -CCGUAGG----UCGAgUUGCUcCUGGaUGG- -5'
27472 3' -53.3 NC_005869.1 + 6661 0.66 0.701741
Target:  5'- aGGCgGUCCuGC-CAGCGGcGGGCg-GCCa -3'
miRNA:   3'- -CCG-UAGGuCGaGUUGCU-CCUGgaUGG- -5'
27472 3' -53.3 NC_005869.1 + 7689 0.75 0.243162
Target:  5'- uGCG-CCAGCUCGGCGAGGuCUggguuguggGCCa -3'
miRNA:   3'- cCGUaGGUCGAGUUGCUCCuGGa--------UGG- -5'
27472 3' -53.3 NC_005869.1 + 10748 0.68 0.598786
Target:  5'- cGGCAcccacgggUgCAGCUCaAGCGAGaGGCCauggagGCCu -3'
miRNA:   3'- -CCGU--------AgGUCGAG-UUGCUC-CUGGa-----UGG- -5'
27472 3' -53.3 NC_005869.1 + 14420 0.69 0.519949
Target:  5'- gGGC-UUCAuGCUgAccuACGAGGACCUGgCg -3'
miRNA:   3'- -CCGuAGGU-CGAgU---UGCUCCUGGAUgG- -5'
27472 3' -53.3 NC_005869.1 + 15412 0.66 0.723013
Target:  5'- cGCGUCUccuccguGGCcgUCAcCGGGGACCcggugGCCg -3'
miRNA:   3'- cCGUAGG-------UCG--AGUuGCUCCUGGa----UGG- -5'
27472 3' -53.3 NC_005869.1 + 16164 0.69 0.487372
Target:  5'- uGGCAagagagcCCGGCggCAGCGGcGGGCCcGCCc -3'
miRNA:   3'- -CCGUa------GGUCGa-GUUGCU-CCUGGaUGG- -5'
27472 3' -53.3 NC_005869.1 + 16649 0.66 0.701741
Target:  5'- uGGCGcCgCAGCUCAGCGcGG-CCgcgGCg -3'
miRNA:   3'- -CCGUaG-GUCGAGUUGCuCCuGGa--UGg -5'
27472 3' -53.3 NC_005869.1 + 16923 0.66 0.690433
Target:  5'- cGGUggCCGGUcgGGCGGGGggcGCCUGCa -3'
miRNA:   3'- -CCGuaGGUCGagUUGCUCC---UGGAUGg -5'
27472 3' -53.3 NC_005869.1 + 17828 0.66 0.683618
Target:  5'- uGGUgGUCCGGCcgcgggacgcgggggUCGGCGAGGggcggGCCcGCCg -3'
miRNA:   3'- -CCG-UAGGUCG---------------AGUUGCUCC-----UGGaUGG- -5'
27472 3' -53.3 NC_005869.1 + 17858 0.66 0.700614
Target:  5'- cGGCGguaccgCCgggGGC-CGAUGAGGGguggcauCCUGCCg -3'
miRNA:   3'- -CCGUa-----GG---UCGaGUUGCUCCU-------GGAUGG- -5'
27472 3' -53.3 NC_005869.1 + 18791 0.66 0.701741
Target:  5'- cGGCGUCCGGCcgCGGCuccGGCCgcgGCUc -3'
miRNA:   3'- -CCGUAGGUCGa-GUUGcucCUGGa--UGG- -5'
27472 3' -53.3 NC_005869.1 + 20061 0.72 0.336636
Target:  5'- aGGCcUCuCAGCUCAACGcgguggucgaccugcAGGACaggaaUACCg -3'
miRNA:   3'- -CCGuAG-GUCGAGUUGC---------------UCCUGg----AUGG- -5'
27472 3' -53.3 NC_005869.1 + 21193 0.71 0.415469
Target:  5'- aGCAUCCAGUUCGACuccuccGuGGCCUgGCCg -3'
miRNA:   3'- cCGUAGGUCGAGUUGcu----C-CUGGA-UGG- -5'
27472 3' -53.3 NC_005869.1 + 21660 0.69 0.531
Target:  5'- cGUGcCCGcGCUCcccAGCGGGGGCCUGCa -3'
miRNA:   3'- cCGUaGGU-CGAG---UUGCUCCUGGAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.