miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27472 3' -53.3 NC_005869.1 + 3356 0.66 0.724123
Target:  5'- aGGCAUgCAGCcCcACGGGGAagCUugUg -3'
miRNA:   3'- -CCGUAgGUCGaGuUGCUCCUg-GAugG- -5'
27472 3' -53.3 NC_005869.1 + 25349 0.67 0.633222
Target:  5'- gGGgGUCUGGCagCAGugccuCGAGGACCgaaACCu -3'
miRNA:   3'- -CCgUAGGUCGa-GUU-----GCUCCUGGa--UGG- -5'
27472 3' -53.3 NC_005869.1 + 6230 0.67 0.633222
Target:  5'- gGGCGUCCaucuGGCU-GGCGAaGACC-ACCu -3'
miRNA:   3'- -CCGUAGG----UCGAgUUGCUcCUGGaUGG- -5'
27472 3' -53.3 NC_005869.1 + 29125 0.67 0.656192
Target:  5'- gGGCAagCAGCUCGucguugccacCGAGGGCUcgggGCUa -3'
miRNA:   3'- -CCGUagGUCGAGUu---------GCUCCUGGa---UGG- -5'
27472 3' -53.3 NC_005869.1 + 17858 0.66 0.700614
Target:  5'- cGGCGguaccgCCgggGGC-CGAUGAGGGguggcauCCUGCCg -3'
miRNA:   3'- -CCGUa-----GG---UCGaGUUGCUCCU-------GGAUGG- -5'
27472 3' -53.3 NC_005869.1 + 6661 0.66 0.701741
Target:  5'- aGGCgGUCCuGC-CAGCGGcGGGCg-GCCa -3'
miRNA:   3'- -CCG-UAGGuCGaGUUGCU-CCUGgaUGG- -5'
27472 3' -53.3 NC_005869.1 + 16649 0.66 0.701741
Target:  5'- uGGCGcCgCAGCUCAGCGcGG-CCgcgGCg -3'
miRNA:   3'- -CCGUaG-GUCGAGUUGCuCCuGGa--UGg -5'
27472 3' -53.3 NC_005869.1 + 18791 0.66 0.701741
Target:  5'- cGGCGUCCGGCcgCGGCuccGGCCgcgGCUc -3'
miRNA:   3'- -CCGUAGGUCGa-GUUGcucCUGGa--UGG- -5'
27472 3' -53.3 NC_005869.1 + 15412 0.66 0.723013
Target:  5'- cGCGUCUccuccguGGCcgUCAcCGGGGACCcggugGCCg -3'
miRNA:   3'- cCGUAGG-------UCG--AGUuGCUCCUGGa----UGG- -5'
27472 3' -53.3 NC_005869.1 + 10748 0.68 0.598786
Target:  5'- cGGCAcccacgggUgCAGCUCaAGCGAGaGGCCauggagGCCu -3'
miRNA:   3'- -CCGU--------AgGUCGAG-UUGCUC-CUGGa-----UGG- -5'
27472 3' -53.3 NC_005869.1 + 32360 0.69 0.542136
Target:  5'- aGGCAUgCAGaaaCUCuuccguuCGAGGACCgcCCa -3'
miRNA:   3'- -CCGUAgGUC---GAGuu-----GCUCCUGGauGG- -5'
27472 3' -53.3 NC_005869.1 + 5262 0.69 0.531
Target:  5'- gGGCGUCgAGCggGugGAGGGuCCgguCCu -3'
miRNA:   3'- -CCGUAGgUCGagUugCUCCU-GGau-GG- -5'
27472 3' -53.3 NC_005869.1 + 23688 0.78 0.151092
Target:  5'- aGCAUCCAGCUgcagCAGCGGccGGGCC-ACCg -3'
miRNA:   3'- cCGUAGGUCGA----GUUGCU--CCUGGaUGG- -5'
27472 3' -53.3 NC_005869.1 + 7689 0.75 0.243162
Target:  5'- uGCG-CCAGCUCGGCGAGGuCUggguuguggGCCa -3'
miRNA:   3'- cCGUaGGUCGAGUUGCUCCuGGa--------UGG- -5'
27472 3' -53.3 NC_005869.1 + 20061 0.72 0.336636
Target:  5'- aGGCcUCuCAGCUCAACGcgguggucgaccugcAGGACaggaaUACCg -3'
miRNA:   3'- -CCGuAG-GUCGAGUUGC---------------UCCUGg----AUGG- -5'
27472 3' -53.3 NC_005869.1 + 27495 0.72 0.350446
Target:  5'- cGGCAucuUCCAGCUCGgagGCGGaGGCCgcuCCu -3'
miRNA:   3'- -CCGU---AGGUCGAGU---UGCUcCUGGau-GG- -5'
27472 3' -53.3 NC_005869.1 + 21193 0.71 0.415469
Target:  5'- aGCAUCCAGUUCGACuccuccGuGGCCUgGCCg -3'
miRNA:   3'- cCGUAGGUCGAGUUGcu----C-CUGGA-UGG- -5'
27472 3' -53.3 NC_005869.1 + 1928 0.7 0.44551
Target:  5'- gGGuCAUCCGGCaguggCAGCG-GGGCCgggaugcgggACCa -3'
miRNA:   3'- -CC-GUAGGUCGa----GUUGCuCCUGGa---------UGG- -5'
27472 3' -53.3 NC_005869.1 + 16164 0.69 0.487372
Target:  5'- uGGCAagagagcCCGGCggCAGCGGcGGGCCcGCCc -3'
miRNA:   3'- -CCGUa------GGUCGa-GUUGCU-CCUGGaUGG- -5'
27472 3' -53.3 NC_005869.1 + 14420 0.69 0.519949
Target:  5'- gGGC-UUCAuGCUgAccuACGAGGACCUGgCg -3'
miRNA:   3'- -CCGuAGGU-CGAgU---UGCUCCUGGAUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.