miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27473 5' -61.9 NC_005869.1 + 10330 0.66 0.290992
Target:  5'- ---aCCCCGagccCGGCGGUGGCc-CGGCc -3'
miRNA:   3'- ggaaGGGGC----GUCGCCGCCGuaGCCGu -5'
27473 5' -61.9 NC_005869.1 + 9914 0.66 0.283839
Target:  5'- aCCguagCCCCGCAgGgGGCGcaGCAgcgccaggUCGGCc -3'
miRNA:   3'- -GGaa--GGGGCGU-CgCCGC--CGU--------AGCCGu -5'
27473 5' -61.9 NC_005869.1 + 18675 0.66 0.276825
Target:  5'- gCggCgCCgGCGGCgGGUGGCGcCGGCGa -3'
miRNA:   3'- gGaaG-GGgCGUCG-CCGCCGUaGCCGU- -5'
27473 5' -61.9 NC_005869.1 + 4613 0.66 0.26995
Target:  5'- ----gUCCGCgGGCGGCGGCGcgGGCGa -3'
miRNA:   3'- ggaagGGGCG-UCGCCGCCGUagCCGU- -5'
27473 5' -61.9 NC_005869.1 + 2918 0.66 0.256615
Target:  5'- gCUcCUCCGCAGCaccauguuugugGGCGGCcgCcugGGCAg -3'
miRNA:   3'- gGAaGGGGCGUCG------------CCGCCGuaG---CCGU- -5'
27473 5' -61.9 NC_005869.1 + 16642 0.67 0.237629
Target:  5'- gCCgucguggCgCCGCAGCucagcGCGGCcgCGGCGc -3'
miRNA:   3'- -GGaa-----GgGGCGUCGc----CGCCGuaGCCGU- -5'
27473 5' -61.9 NC_005869.1 + 18558 0.67 0.231567
Target:  5'- aCggCgCCGCGcGCGGCGGCGcCGGg- -3'
miRNA:   3'- gGaaGgGGCGU-CGCCGCCGUaGCCgu -5'
27473 5' -61.9 NC_005869.1 + 24692 0.67 0.225636
Target:  5'- cCCgUCCCCGCGGaGGCaGCAgCaGCAg -3'
miRNA:   3'- -GGaAGGGGCGUCgCCGcCGUaGcCGU- -5'
27473 5' -61.9 NC_005869.1 + 8827 0.67 0.219834
Target:  5'- uCCaggUCCCCGUGGcCGGCGcGCuccacggUGGCGg -3'
miRNA:   3'- -GGa--AGGGGCGUC-GCCGC-CGua-----GCCGU- -5'
27473 5' -61.9 NC_005869.1 + 26234 0.67 0.219834
Target:  5'- aCCUUCuacaugcucugCCCGCAGaaGCGcGCcAUCGGCc -3'
miRNA:   3'- -GGAAG-----------GGGCGUCgcCGC-CG-UAGCCGu -5'
27473 5' -61.9 NC_005869.1 + 5425 0.67 0.219834
Target:  5'- --gUCCCacauaggugaGgGGCGGUGGCAgCGGCGg -3'
miRNA:   3'- ggaAGGGg---------CgUCGCCGCCGUaGCCGU- -5'
27473 5' -61.9 NC_005869.1 + 5746 0.68 0.208611
Target:  5'- --gUCCCCGUAGaCGGagcgcaggGGCcgGUCGGCGa -3'
miRNA:   3'- ggaAGGGGCGUC-GCCg-------CCG--UAGCCGU- -5'
27473 5' -61.9 NC_005869.1 + 24129 0.68 0.203188
Target:  5'- aCCUUCaCUGCAGCaGCGGCAgcaGGa- -3'
miRNA:   3'- -GGAAGgGGCGUCGcCGCCGUag-CCgu -5'
27473 5' -61.9 NC_005869.1 + 17245 0.68 0.197887
Target:  5'- gCCacCUCCGUGGCGGUGGg--CGGCAu -3'
miRNA:   3'- -GGaaGGGGCGUCGCCGCCguaGCCGU- -5'
27473 5' -61.9 NC_005869.1 + 15474 0.68 0.192707
Target:  5'- --aUCUCCuggGCGGCGGCGgGCGcUUGGCGg -3'
miRNA:   3'- ggaAGGGG---CGUCGCCGC-CGU-AGCCGU- -5'
27473 5' -61.9 NC_005869.1 + 17056 0.68 0.182703
Target:  5'- aCggCCCUGCGgggcacgcggcGCGGgGGC-UCGGCAc -3'
miRNA:   3'- gGaaGGGGCGU-----------CGCCgCCGuAGCCGU- -5'
27473 5' -61.9 NC_005869.1 + 15530 0.68 0.182703
Target:  5'- ---aCCCCGUGGCGGauguGGUggCGGCGg -3'
miRNA:   3'- ggaaGGGGCGUCGCCg---CCGuaGCCGU- -5'
27473 5' -61.9 NC_005869.1 + 23354 0.69 0.177876
Target:  5'- cCCcUCCUCGC-GCGGCcGCGUCaGCGa -3'
miRNA:   3'- -GGaAGGGGCGuCGCCGcCGUAGcCGU- -5'
27473 5' -61.9 NC_005869.1 + 18766 0.69 0.168559
Target:  5'- cCCggcCCCCGCGGCuccUGuGCGUCGGCGu -3'
miRNA:   3'- -GGaa-GGGGCGUCGcc-GC-CGUAGCCGU- -5'
27473 5' -61.9 NC_005869.1 + 16577 0.69 0.155404
Target:  5'- cCCUagCCCCGCGGCGGUccaGC--CGGCGc -3'
miRNA:   3'- -GGAa-GGGGCGUCGCCGc--CGuaGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.