Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27479 | 3' | -58.6 | NC_005869.1 | + | 30992 | 1.14 | 0.000113 |
Target: 5'- cCCGCCGCUUGUGCAGCACCACCUCCCg -3' miRNA: 3'- -GGCGGCGAACACGUCGUGGUGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 27380 | 0.8 | 0.041362 |
Target: 5'- cCCGCCGCUg--GCAGgACCGCCUCg- -3' miRNA: 3'- -GGCGGCGAacaCGUCgUGGUGGAGgg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 17538 | 0.79 | 0.04794 |
Target: 5'- gCCGCCGUaccccggUGgcggugGCAGCGCCGCCcgCCCg -3' miRNA: 3'- -GGCGGCGa------ACa-----CGUCGUGGUGGa-GGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 24325 | 0.78 | 0.065045 |
Target: 5'- cCCGaCCGCUacauggacgcggacgUGcUGCAGCGCCACCUgCUg -3' miRNA: 3'- -GGC-GGCGA---------------AC-ACGUCGUGGUGGAgGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 16475 | 0.77 | 0.076561 |
Target: 5'- aCCGCCGCUgcgGgcggGCGGCGCUGCCaCCg -3' miRNA: 3'- -GGCGGCGAa--Ca---CGUCGUGGUGGaGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 16750 | 0.76 | 0.085957 |
Target: 5'- gUCGCCGCgcccgagGUGCuGC-CCAgCCUCCCc -3' miRNA: 3'- -GGCGGCGaa-----CACGuCGuGGU-GGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 28335 | 0.75 | 0.093715 |
Target: 5'- aCCGCCGCUacGUGCuGGcCACCGCC-CUCa -3' miRNA: 3'- -GGCGGCGAa-CACG-UC-GUGGUGGaGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 18464 | 0.75 | 0.108136 |
Target: 5'- gCCGCCGCcg--GguGCuCCGCCUCCg -3' miRNA: 3'- -GGCGGCGaacaCguCGuGGUGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 18561 | 0.75 | 0.108136 |
Target: 5'- gCGCCGCgcgcgGCGGCGCCgggcuaccGCCUCCa -3' miRNA: 3'- gGCGGCGaaca-CGUCGUGG--------UGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 18718 | 0.74 | 0.124619 |
Target: 5'- gCCGCCGCUcac-CAcCACCACCUCCUc -3' miRNA: 3'- -GGCGGCGAacacGUcGUGGUGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 25053 | 0.73 | 0.132215 |
Target: 5'- aCCGCCGCcugcauggucacgGUGCAGCuccacugcaugcacACCuuccucACCUCCCg -3' miRNA: 3'- -GGCGGCGaa-----------CACGUCG--------------UGG------UGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 23322 | 0.73 | 0.1356 |
Target: 5'- gCCGCCGCgcccgacaGCcGCGCCAggcCCUCCCc -3' miRNA: 3'- -GGCGGCGaaca----CGuCGUGGU---GGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 30345 | 0.73 | 0.139453 |
Target: 5'- -gGCCGUggcccGCAGCuguaucuccACCACCUCCCg -3' miRNA: 3'- ggCGGCGaaca-CGUCG---------UGGUGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 24461 | 0.73 | 0.139453 |
Target: 5'- gCCGCCGCcUGgaaGCGGC-CCucuUCUCCCc -3' miRNA: 3'- -GGCGGCGaACa--CGUCGuGGu--GGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 25418 | 0.72 | 0.157627 |
Target: 5'- aCCGCCGCgucaucGcccacgccucgcgucUGCGccGCgACCACCUCCCg -3' miRNA: 3'- -GGCGGCGaa----C---------------ACGU--CG-UGGUGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 16208 | 0.72 | 0.17889 |
Target: 5'- gCCGCCGCUgc-GCcgaGGCGCCACgCggaaCCCa -3' miRNA: 3'- -GGCGGCGAacaCG---UCGUGGUG-Ga---GGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 32071 | 0.71 | 0.183837 |
Target: 5'- cCCGCgggCGCUUG---GGCACCACCuggUCCCg -3' miRNA: 3'- -GGCG---GCGAACacgUCGUGGUGG---AGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 13323 | 0.71 | 0.183837 |
Target: 5'- gCCGCCGCc---GCcGCGCCucccgcuCCUCCCu -3' miRNA: 3'- -GGCGGCGaacaCGuCGUGGu------GGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 28467 | 0.71 | 0.188905 |
Target: 5'- cCUGCCGCUUcgaggagaugGUGUucuacuaCACCACCUCCg -3' miRNA: 3'- -GGCGGCGAA----------CACGuc-----GUGGUGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 31668 | 0.71 | 0.188905 |
Target: 5'- aCGCgacucaCGCUgg-GCAGguuCACCGCCUCCCu -3' miRNA: 3'- gGCG------GCGAacaCGUC---GUGGUGGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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