miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27479 3' -58.6 NC_005869.1 + 23220 0.68 0.302735
Target:  5'- cCCGUCGUUgc-GCAGCugCACCacguugcggCCCc -3'
miRNA:   3'- -GGCGGCGAacaCGUCGugGUGGa--------GGG- -5'
27479 3' -58.6 NC_005869.1 + 11734 0.7 0.221951
Target:  5'- gCgGCgGCggggGUG-AGCGCgGCCUCCCu -3'
miRNA:   3'- -GgCGgCGaa--CACgUCGUGgUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 15485 0.7 0.234014
Target:  5'- gCCGCCGCgc--GCGGCGCCGuuCUUCgCg -3'
miRNA:   3'- -GGCGGCGaacaCGUCGUGGU--GGAGgG- -5'
27479 3' -58.6 NC_005869.1 + 15996 0.69 0.246624
Target:  5'- gCGCCGCUggacgGgGCGGCGcgugcgcgcCCACCUaccgCCCg -3'
miRNA:   3'- gGCGGCGAa----CaCGUCGU---------GGUGGA----GGG- -5'
27479 3' -58.6 NC_005869.1 + 23873 0.69 0.246624
Target:  5'- uCCGCCGCUccUGcacggGCGgagaggccgcGCGCUugcgGCCUCCCc -3'
miRNA:   3'- -GGCGGCGA--ACa----CGU----------CGUGG----UGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 25750 0.69 0.253138
Target:  5'- aCUGCCGCUgcaaccucUGcGCAccGCACCgcuGCCUCgCCa -3'
miRNA:   3'- -GGCGGCGA--------ACaCGU--CGUGG---UGGAG-GG- -5'
27479 3' -58.6 NC_005869.1 + 16669 0.69 0.259792
Target:  5'- gCCGCgGCgcUGgagcggGCGGCgGCCGCCgugCCCc -3'
miRNA:   3'- -GGCGgCGa-ACa-----CGUCG-UGGUGGa--GGG- -5'
27479 3' -58.6 NC_005869.1 + 8131 0.69 0.280612
Target:  5'- gCgGCCGCa-GUGCucGCACUucuggGCCUCCUg -3'
miRNA:   3'- -GgCGGCGaaCACGu-CGUGG-----UGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 22076 0.68 0.295214
Target:  5'- gCCGUCGCcUG-GgAGC-CCGCCUCgCg -3'
miRNA:   3'- -GGCGGCGaACaCgUCGuGGUGGAGgG- -5'
27479 3' -58.6 NC_005869.1 + 13671 0.71 0.204851
Target:  5'- gCCGCCGCag--GgAGCGUCGCCUCCg -3'
miRNA:   3'- -GGCGGCGaacaCgUCGUGGUGGAGGg -5'
27479 3' -58.6 NC_005869.1 + 31668 0.71 0.188905
Target:  5'- aCGCgacucaCGCUgg-GCAGguuCACCGCCUCCCu -3'
miRNA:   3'- gGCG------GCGAacaCGUC---GUGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 28467 0.71 0.188905
Target:  5'- cCUGCCGCUUcgaggagaugGUGUucuacuaCACCACCUCCg -3'
miRNA:   3'- -GGCGGCGAA----------CACGuc-----GUGGUGGAGGg -5'
27479 3' -58.6 NC_005869.1 + 17538 0.79 0.04794
Target:  5'- gCCGCCGUaccccggUGgcggugGCAGCGCCGCCcgCCCg -3'
miRNA:   3'- -GGCGGCGa------ACa-----CGUCGUGGUGGa-GGG- -5'
27479 3' -58.6 NC_005869.1 + 24325 0.78 0.065045
Target:  5'- cCCGaCCGCUacauggacgcggacgUGcUGCAGCGCCACCUgCUg -3'
miRNA:   3'- -GGC-GGCGA---------------AC-ACGUCGUGGUGGAgGG- -5'
27479 3' -58.6 NC_005869.1 + 16750 0.76 0.085957
Target:  5'- gUCGCCGCgcccgagGUGCuGC-CCAgCCUCCCc -3'
miRNA:   3'- -GGCGGCGaa-----CACGuCGuGGU-GGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 28335 0.75 0.093715
Target:  5'- aCCGCCGCUacGUGCuGGcCACCGCC-CUCa -3'
miRNA:   3'- -GGCGGCGAa-CACG-UC-GUGGUGGaGGG- -5'
27479 3' -58.6 NC_005869.1 + 18718 0.74 0.124619
Target:  5'- gCCGCCGCUcac-CAcCACCACCUCCUc -3'
miRNA:   3'- -GGCGGCGAacacGUcGUGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 25053 0.73 0.132215
Target:  5'- aCCGCCGCcugcauggucacgGUGCAGCuccacugcaugcacACCuuccucACCUCCCg -3'
miRNA:   3'- -GGCGGCGaa-----------CACGUCG--------------UGG------UGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 24461 0.73 0.139453
Target:  5'- gCCGCCGCcUGgaaGCGGC-CCucuUCUCCCc -3'
miRNA:   3'- -GGCGGCGaACa--CGUCGuGGu--GGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 13323 0.71 0.183837
Target:  5'- gCCGCCGCc---GCcGCGCCucccgcuCCUCCCu -3'
miRNA:   3'- -GGCGGCGaacaCGuCGUGGu------GGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.