miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27480 5' -55.5 NC_005869.1 + 4805 0.7 0.321
Target:  5'- ---gCGGGGGGauCAUguCCACCUGCg -3'
miRNA:   3'- cguaGUCCCUCgcGUAguGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 12680 0.69 0.363764
Target:  5'- cGCcgaGGaGGAGCGCAUCcugcGCUACgUGCa -3'
miRNA:   3'- -CGuagUC-CCUCGCGUAG----UGGUGgACG- -5'
27480 5' -55.5 NC_005869.1 + 22734 0.69 0.363764
Target:  5'- cCGUCAGuGGAGgcCGCGUCugCAUCaggGCg -3'
miRNA:   3'- cGUAGUC-CCUC--GCGUAGugGUGGa--CG- -5'
27480 5' -55.5 NC_005869.1 + 23047 0.68 0.410316
Target:  5'- gGCAUCAGcaGGUGCGUCuCCGCgUUGCc -3'
miRNA:   3'- -CGUAGUCccUCGCGUAGuGGUG-GACG- -5'
27480 5' -55.5 NC_005869.1 + 9359 0.68 0.420062
Target:  5'- cGCGgggaCGGGGGGCGCAggccggggaCGgCGCCgGCg -3'
miRNA:   3'- -CGUa---GUCCCUCGCGUa--------GUgGUGGaCG- -5'
27480 5' -55.5 NC_005869.1 + 22294 0.67 0.460395
Target:  5'- gGCGcCAGGGAGgcCGCGcUCACC-CCcGCc -3'
miRNA:   3'- -CGUaGUCCCUC--GCGU-AGUGGuGGaCG- -5'
27480 5' -55.5 NC_005869.1 + 25548 0.69 0.400712
Target:  5'- gGCAcgCGGGGgcuccugcucgAGCGCcgCGCCACCcuccGCc -3'
miRNA:   3'- -CGUa-GUCCC-----------UCGCGuaGUGGUGGa---CG- -5'
27480 5' -55.5 NC_005869.1 + 23370 0.7 0.337643
Target:  5'- cGCGUCagcgacggcgAGGGcgaccgagAGCGCGUCGCCcCCUccGCg -3'
miRNA:   3'- -CGUAG----------UCCC--------UCGCGUAGUGGuGGA--CG- -5'
27480 5' -55.5 NC_005869.1 + 22252 0.7 0.337643
Target:  5'- uCGUcCAGGGAGgGCAg---CGCCUGCa -3'
miRNA:   3'- cGUA-GUCCCUCgCGUagugGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 21323 0.7 0.329244
Target:  5'- uGCAUCAGGuacAG-GC-UCACgGCCUGCu -3'
miRNA:   3'- -CGUAGUCCc--UCgCGuAGUGgUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 17190 0.7 0.329244
Target:  5'- -gGUCAGGGAGCuCuuggcCACCGCCacggGCg -3'
miRNA:   3'- cgUAGUCCCUCGcGua---GUGGUGGa---CG- -5'
27480 5' -55.5 NC_005869.1 + 10666 0.67 0.470797
Target:  5'- aGCGgcUCGGaGGGGCug--CACUGCCUGCa -3'
miRNA:   3'- -CGU--AGUC-CCUCGcguaGUGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 14963 0.67 0.49195
Target:  5'- gGCAUCAu-GAcgGCGUCGCCAuCCUGCg -3'
miRNA:   3'- -CGUAGUccCUcgCGUAGUGGU-GGACG- -5'
27480 5' -55.5 NC_005869.1 + 5448 0.67 0.513531
Target:  5'- gGCAgCGGcGGGGCGCGguuCCugCUGg -3'
miRNA:   3'- -CGUaGUC-CCUCGCGUaguGGugGACg -5'
27480 5' -55.5 NC_005869.1 + 30844 0.66 0.528865
Target:  5'- uGCAgcucacCAGGGAccggggggcccgcaGCGCGUCugucacuuucaucuGCCgcACCUGCg -3'
miRNA:   3'- -CGUa-----GUCCCU--------------CGCGUAG--------------UGG--UGGACG- -5'
27480 5' -55.5 NC_005869.1 + 25759 0.66 0.535489
Target:  5'- uCGUcCAGGuGGUcacccgccaGCAaCACCACCUGCa -3'
miRNA:   3'- cGUA-GUCCcUCG---------CGUaGUGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 1463 0.66 0.546592
Target:  5'- ---gCGGGGAGUGCcuaGCCGCUcGCu -3'
miRNA:   3'- cguaGUCCCUCGCGuagUGGUGGaCG- -5'
27480 5' -55.5 NC_005869.1 + 8969 0.66 0.569007
Target:  5'- uGCAUgCAGuGGAGUGCAcCGugACCaUGCa -3'
miRNA:   3'- -CGUA-GUC-CCUCGCGUaGUggUGG-ACG- -5'
27480 5' -55.5 NC_005869.1 + 16635 0.66 0.569007
Target:  5'- cGCG-CGGGGuggGGgGCAcCACCGCCgucaGCc -3'
miRNA:   3'- -CGUaGUCCC---UCgCGUaGUGGUGGa---CG- -5'
27480 5' -55.5 NC_005869.1 + 28887 0.76 0.137386
Target:  5'- aGC-UCuGGGAGCGCAUgcgcgugcucCACCAggcCCUGCa -3'
miRNA:   3'- -CGuAGuCCCUCGCGUA----------GUGGU---GGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.