miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27480 5' -55.5 NC_005869.1 + 25025 0.67 0.513531
Target:  5'- -gGUCcuGGaGGAGCGgcgcaagacCGUCACCgccGCCUGCa -3'
miRNA:   3'- cgUAG--UC-CCUCGC---------GUAGUGG---UGGACG- -5'
27480 5' -55.5 NC_005869.1 + 12276 0.68 0.439965
Target:  5'- cGC-UCGGGGc-CGCA-CACCuuCCUGCa -3'
miRNA:   3'- -CGuAGUCCCucGCGUaGUGGu-GGACG- -5'
27480 5' -55.5 NC_005869.1 + 7845 0.67 0.470797
Target:  5'- aGCGcugCAGGcGGGCuCuggacggcCACCACCUGCa -3'
miRNA:   3'- -CGUa--GUCC-CUCGcGua------GUGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 10951 0.67 0.48026
Target:  5'- cGCGgcgCGGGcccacauGAGCGCG--GCCGCCUGg -3'
miRNA:   3'- -CGUa--GUCC-------CUCGCGUagUGGUGGACg -5'
27480 5' -55.5 NC_005869.1 + 15617 0.67 0.481317
Target:  5'- cCAUCcuGGGGGUGCGccgcagcCGCCGCCUccGCa -3'
miRNA:   3'- cGUAGu-CCCUCGCGUa------GUGGUGGA--CG- -5'
27480 5' -55.5 NC_005869.1 + 29488 0.67 0.481317
Target:  5'- aGUcUCAGGGAGCGCAggcaucucuuUCaACUACUccaGCa -3'
miRNA:   3'- -CGuAGUCCCUCGCGU----------AG-UGGUGGa--CG- -5'
27480 5' -55.5 NC_005869.1 + 30211 0.67 0.481317
Target:  5'- aGUcUCAGGGAGCGCAggcaucucuuUCaACUACUccaGCa -3'
miRNA:   3'- -CGuAGUCCCUCGCGU----------AG-UGGUGGa--CG- -5'
27480 5' -55.5 NC_005869.1 + 11428 0.67 0.481317
Target:  5'- cGCAacaagCGGcuGGAGCGCgugGUCAgCACCUcGCg -3'
miRNA:   3'- -CGUa----GUC--CCUCGCG---UAGUgGUGGA-CG- -5'
27480 5' -55.5 NC_005869.1 + 1866 0.67 0.49195
Target:  5'- uGCggCAGGGGcuGUGCAUCAUCAggaUGCc -3'
miRNA:   3'- -CGuaGUCCCU--CGCGUAGUGGUgg-ACG- -5'
27480 5' -55.5 NC_005869.1 + 23629 0.68 0.429946
Target:  5'- --uUCAGGGGGaccaGCAUCugCACa-GCc -3'
miRNA:   3'- cguAGUCCCUCg---CGUAGugGUGgaCG- -5'
27480 5' -55.5 NC_005869.1 + 9359 0.68 0.420062
Target:  5'- cGCGgggaCGGGGGGCGCAggccggggaCGgCGCCgGCg -3'
miRNA:   3'- -CGUa---GUCCCUCGCGUa--------GUgGUGGaCG- -5'
27480 5' -55.5 NC_005869.1 + 23047 0.68 0.410316
Target:  5'- gGCAUCAGcaGGUGCGUCuCCGCgUUGCc -3'
miRNA:   3'- -CGUAGUCccUCGCGUAGuGGUG-GACG- -5'
27480 5' -55.5 NC_005869.1 + 22244 0.84 0.035862
Target:  5'- aGCGUgCAGGGAcCGCAcagCGCCGCCUGCg -3'
miRNA:   3'- -CGUA-GUCCCUcGCGUa--GUGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 13673 0.73 0.221669
Target:  5'- cGCcgCAGGGAGCGUcgCcuCCGCCg-- -3'
miRNA:   3'- -CGuaGUCCCUCGCGuaGu-GGUGGacg -5'
27480 5' -55.5 NC_005869.1 + 31624 0.71 0.28958
Target:  5'- aCAUCAGGuGGGCGCcucgaaaCAUCACaCUGCc -3'
miRNA:   3'- cGUAGUCC-CUCGCGua-----GUGGUG-GACG- -5'
27480 5' -55.5 NC_005869.1 + 15216 0.71 0.28958
Target:  5'- -----cGGGGGCGCc-CGCCGCCUGUc -3'
miRNA:   3'- cguaguCCCUCGCGuaGUGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 9922 0.7 0.312912
Target:  5'- cCcgCAGGGGGCGCAgcagcgccaggUCGgCCACCacGCg -3'
miRNA:   3'- cGuaGUCCCUCGCGU-----------AGU-GGUGGa-CG- -5'
27480 5' -55.5 NC_005869.1 + 4805 0.7 0.321
Target:  5'- ---gCGGGGGGauCAUguCCACCUGCg -3'
miRNA:   3'- cguaGUCCCUCgcGUAguGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 12680 0.69 0.363764
Target:  5'- cGCcgaGGaGGAGCGCAUCcugcGCUACgUGCa -3'
miRNA:   3'- -CGuagUC-CCUCGCGUAG----UGGUGgACG- -5'
27480 5' -55.5 NC_005869.1 + 22734 0.69 0.363764
Target:  5'- cCGUCAGuGGAGgcCGCGUCugCAUCaggGCg -3'
miRNA:   3'- cGUAGUC-CCUC--GCGUAGugGUGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.