miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27480 5' -55.5 NC_005869.1 + 31749 1.13 0.000238
Target:  5'- cGCAUCAGGGAGCGCAUCACCACCUGCc -3'
miRNA:   3'- -CGUAGUCCCUCGCGUAGUGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 22244 0.84 0.035862
Target:  5'- aGCGUgCAGGGAcCGCAcagCGCCGCCUGCg -3'
miRNA:   3'- -CGUA-GUCCCUcGCGUa--GUGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 28887 0.76 0.137386
Target:  5'- aGC-UCuGGGAGCGCAUgcgcgugcucCACCAggcCCUGCa -3'
miRNA:   3'- -CGuAGuCCCUCGCGUA----------GUGGU---GGACG- -5'
27480 5' -55.5 NC_005869.1 + 15339 0.75 0.145519
Target:  5'- gGCggCGGGGGGCGCAUCuuauuguggGCCACg-GCg -3'
miRNA:   3'- -CGuaGUCCCUCGCGUAG---------UGGUGgaCG- -5'
27480 5' -55.5 NC_005869.1 + 13673 0.73 0.221669
Target:  5'- cGCcgCAGGGAGCGUcgCcuCCGCCg-- -3'
miRNA:   3'- -CGuaGUCCCUCGCGuaGu-GGUGGacg -5'
27480 5' -55.5 NC_005869.1 + 22117 0.72 0.234072
Target:  5'- uGCGUCGGGuucguGCGCGgaggCACCACC-GCc -3'
miRNA:   3'- -CGUAGUCCcu---CGCGUa---GUGGUGGaCG- -5'
27480 5' -55.5 NC_005869.1 + 31624 0.71 0.28958
Target:  5'- aCAUCAGGuGGGCGCcucgaaaCAUCACaCUGCc -3'
miRNA:   3'- cGUAGUCC-CUCGCGua-----GUGGUG-GACG- -5'
27480 5' -55.5 NC_005869.1 + 15216 0.71 0.28958
Target:  5'- -----cGGGGGCGCc-CGCCGCCUGUc -3'
miRNA:   3'- cguaguCCCUCGCGuaGUGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 9115 0.7 0.30498
Target:  5'- uCGUCGGGGAgugggcucGCGCGgcgCACCAgcagggUCUGCa -3'
miRNA:   3'- cGUAGUCCCU--------CGCGUa--GUGGU------GGACG- -5'
27480 5' -55.5 NC_005869.1 + 9922 0.7 0.312912
Target:  5'- cCcgCAGGGGGCGCAgcagcgccaggUCGgCCACCacGCg -3'
miRNA:   3'- cGuaGUCCCUCGCGU-----------AGU-GGUGGa-CG- -5'
27480 5' -55.5 NC_005869.1 + 4805 0.7 0.321
Target:  5'- ---gCGGGGGGauCAUguCCACCUGCg -3'
miRNA:   3'- cguaGUCCCUCgcGUAguGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 17190 0.7 0.329244
Target:  5'- -gGUCAGGGAGCuCuuggcCACCGCCacggGCg -3'
miRNA:   3'- cgUAGUCCCUCGcGua---GUGGUGGa---CG- -5'
27480 5' -55.5 NC_005869.1 + 21323 0.7 0.329244
Target:  5'- uGCAUCAGGuacAG-GC-UCACgGCCUGCu -3'
miRNA:   3'- -CGUAGUCCc--UCgCGuAGUGgUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 22252 0.7 0.337643
Target:  5'- uCGUcCAGGGAGgGCAg---CGCCUGCa -3'
miRNA:   3'- cGUA-GUCCCUCgCGUagugGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 23370 0.7 0.337643
Target:  5'- cGCGUCagcgacggcgAGGGcgaccgagAGCGCGUCGCCcCCUccGCg -3'
miRNA:   3'- -CGUAG----------UCCC--------UCGCGUAGUGGuGGA--CG- -5'
27480 5' -55.5 NC_005869.1 + 22734 0.69 0.363764
Target:  5'- cCGUCAGuGGAGgcCGCGUCugCAUCaggGCg -3'
miRNA:   3'- cGUAGUC-CCUC--GCGUAGugGUGGa--CG- -5'
27480 5' -55.5 NC_005869.1 + 12680 0.69 0.363764
Target:  5'- cGCcgaGGaGGAGCGCAUCcugcGCUACgUGCa -3'
miRNA:   3'- -CGuagUC-CCUCGCGUAG----UGGUGgACG- -5'
27480 5' -55.5 NC_005869.1 + 25548 0.69 0.400712
Target:  5'- gGCAcgCGGGGgcuccugcucgAGCGCcgCGCCACCcuccGCc -3'
miRNA:   3'- -CGUa-GUCCC-----------UCGCGuaGUGGUGGa---CG- -5'
27480 5' -55.5 NC_005869.1 + 23047 0.68 0.410316
Target:  5'- gGCAUCAGcaGGUGCGUCuCCGCgUUGCc -3'
miRNA:   3'- -CGUAGUCccUCGCGUAGuGGUG-GACG- -5'
27480 5' -55.5 NC_005869.1 + 9359 0.68 0.420062
Target:  5'- cGCGgggaCGGGGGGCGCAggccggggaCGgCGCCgGCg -3'
miRNA:   3'- -CGUa---GUCCCUCGCGUa--------GUgGUGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.